Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IQ863_RS24195 Genome accession   NZ_CP064270
Coordinates   4692249..4692665 (-) Length   138 a.a.
NCBI ID   WP_181170505.1    Uniprot ID   -
Organism   Priestia megaterium strain N447-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4687249..4697665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ863_RS24175 - 4687251..4687766 (+) 516 WP_116739305.1 enoyl-CoA hydratase/isomerase family protein -
  IQ863_RS28220 - 4687907..4688032 (+) 126 WP_014458690.1 hypothetical protein -
  IQ863_RS24180 helD 4688276..4690594 (+) 2319 WP_014458691.1 RNA polymerase recycling motor HelD -
  IQ863_RS24185 - 4690983..4691573 (+) 591 WP_014458692.1 CPBP family intramembrane glutamic endopeptidase -
  IQ863_RS24190 comJ 4691806..4692213 (-) 408 WP_014458693.1 competence protein ComJ -
  IQ863_RS24195 nucA/comI 4692249..4692665 (-) 417 WP_181170505.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IQ863_RS24200 - 4693067..4693327 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  IQ863_RS24205 - 4693484..4695433 (+) 1950 WP_208732972.1 FUSC family protein -
  IQ863_RS24210 - 4695469..4696287 (-) 819 WP_014458697.1 phytoene/squalene synthase family protein -
  IQ863_RS24215 - 4696613..4697284 (+) 672 WP_014458698.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15095.72 Da        Isoelectric Point: 4.2601

>NTDB_id=500483 IQ863_RS24195 WP_181170505.1 4692249..4692665(-) (nucA/comI) [Priestia megaterium strain N447-3]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=500483 IQ863_RS24195 WP_181170505.1 4692249..4692665(-) (nucA/comI) [Priestia megaterium strain N447-3]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTGCTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAACCGAGAAGAATCGCTAAAAGGATAC
CCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594