Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IQ863_RS21200 Genome accession   NZ_CP064270
Coordinates   4097614..4099341 (+) Length   575 a.a.
NCBI ID   WP_014458250.1    Uniprot ID   -
Organism   Priestia megaterium strain N447-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4092614..4104341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ863_RS21175 - 4092811..4093044 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  IQ863_RS21180 - 4093044..4093940 (+) 897 WP_243555967.1 polyprenyl synthetase family protein -
  IQ863_RS21185 dxs 4094261..4096162 (+) 1902 WP_014458248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IQ863_RS21190 - 4096159..4096986 (+) 828 WP_014458249.1 TlyA family RNA methyltransferase -
  IQ863_RS21195 argR 4097148..4097597 (+) 450 WP_013059136.1 transcriptional regulator ArgR -
  IQ863_RS21200 recN 4097614..4099341 (+) 1728 WP_014458250.1 DNA repair protein RecN Machinery gene
  IQ863_RS21205 spoIVB 4099525..4100805 (+) 1281 WP_014458251.1 SpoIVB peptidase -
  IQ863_RS21210 spo0A 4101033..4101821 (+) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  IQ863_RS21215 - 4101975..4102946 (+) 972 WP_243555969.1 tyrosine-type recombinase/integrase -
  IQ863_RS21220 - 4103115..4103897 (+) 783 WP_243555971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64625.19 Da        Isoelectric Point: 4.8260

>NTDB_id=500478 IQ863_RS21200 WP_014458250.1 4097614..4099341(+) (recN) [Priestia megaterium strain N447-3]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVAFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=500478 IQ863_RS21200 WP_014458250.1 4097614..4099341(+) (recN) [Priestia megaterium strain N447-3]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCATGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGTATCAATGGGAAGCTCGTAACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGATATACATCATTAAAAAAGCAGTTGGATCAATTAACTGAAAATGAGCAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAACTCAATGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCCAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTGGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCGGAGATTATTTCATCGAGCTTCTATCAGTTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTGGATTTATTAG
AATTTGATCCGAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCATTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATAGAGATACGCACGTGAGCAA
AATCAAAGAACAGTTAAACAGCGTAGCACAGGATTTATTAGTAGAAGCTAACAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAAACCGTATTTCAAATTAAATTTTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGC
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAAAGCATCTTCTCTAAACATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGGGTAAGC
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCACAGGTTCTTTGCATATCTCATTTGCC
GCAAGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACCACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAGATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAAGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65