Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IQ863_RS17840 Genome accession   NZ_CP064270
Coordinates   3469044..3469541 (+) Length   165 a.a.
NCBI ID   WP_243555849.1    Uniprot ID   -
Organism   Priestia megaterium strain N447-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464044..3474541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ863_RS17815 - 3464256..3464939 (+) 684 WP_013059772.1 response regulator transcription factor -
  IQ863_RS17820 fliS 3465323..3465754 (+) 432 WP_209369400.1 flagellar export chaperone FliS -
  IQ863_RS17825 - 3465875..3466312 (+) 438 WP_115655071.1 YaaR family protein -
  IQ863_RS17830 - 3466419..3467264 (+) 846 WP_014457786.1 DegV family protein -
  IQ863_RS17835 - 3467344..3468849 (+) 1506 WP_243555848.1 DEAD/DEAH box helicase -
  IQ863_RS17840 comFC 3469044..3469541 (+) 498 WP_243555849.1 phosphoribosyltransferase family protein Machinery gene
  IQ863_RS17845 - 3469603..3470016 (+) 414 WP_014457789.1 TIGR03826 family flagellar region protein -
  IQ863_RS17850 flgM 3470176..3470430 (+) 255 WP_014457790.1 flagellar biosynthesis anti-sigma factor FlgM -
  IQ863_RS17855 - 3470452..3470913 (+) 462 WP_223260217.1 flagellar protein FlgN -
  IQ863_RS17860 flgK 3470932..3472443 (+) 1512 WP_243555850.1 flagellar hook-associated protein FlgK -
  IQ863_RS17865 flgL 3472446..3473327 (+) 882 WP_014457793.1 flagellar hook-associated protein FlgL -
  IQ863_RS17870 fliW 3473408..3473830 (+) 423 WP_014457794.1 flagellar assembly protein FliW -
  IQ863_RS17875 csrA 3473855..3474085 (+) 231 WP_013085431.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19328.12 Da        Isoelectric Point: 8.4544

>NTDB_id=500465 IQ863_RS17840 WP_243555849.1 3469044..3469541(+) (comFC) [Priestia megaterium strain N447-3]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELLSDNIEIPLIRCSGTKQSKKNRRSRLTERLEFKVVDPSMVTNQEFILIDDIYTTGATVRQAANCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=500465 IQ863_RS17840 WP_243555849.1 3469044..3469541(+) (comFC) [Priestia megaterium strain N447-3]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTTAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCCAAAGCTATACTAGTTCCTATACCTTTAACGGACGAAAGGTTATATGAGAGAGGGTTTAACCAATCCTTAGCG
CTAGCTGAGCTTCTCAGTGACAATATAGAAATACCTCTTATTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGACAGAAAGGCTGGAATTTAAAGTAGTCGATCCCTCAATGGTTACGAATCAAGAATTTATCTTAATTGATG
ACATTTATACAACGGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTTCGGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.503