Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IQ863_RS01115 Genome accession   NZ_CP064270
Coordinates   179396..180346 (+) Length   316 a.a.
NCBI ID   WP_014459287.1    Uniprot ID   A0A8D3WZD5
Organism   Priestia megaterium strain N447-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174396..185346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ863_RS01085 lepB 174570..175130 (+) 561 WP_060745332.1 signal peptidase I -
  IQ863_RS01090 - 175364..175927 (+) 564 WP_243556516.1 NAD(P)H-dependent oxidoreductase -
  IQ863_RS01095 - 176483..176668 (+) 186 WP_014459286.1 hypothetical protein -
  IQ863_RS01100 - 177159..177323 (+) 165 WP_013057894.1 hypothetical protein -
  IQ863_RS01105 - 177405..177659 (-) 255 WP_013057893.1 hypothetical protein -
  IQ863_RS01110 - 178022..178828 (+) 807 WP_013057892.1 cell wall hydrolase -
  IQ863_RS01115 ceuB 179396..180346 (+) 951 WP_014459287.1 ABC transporter permease Machinery gene
  IQ863_RS01120 - 180339..181286 (+) 948 WP_243556518.1 iron chelate uptake ABC transporter family permease subunit -
  IQ863_RS01125 - 181280..182038 (+) 759 WP_243556520.1 ABC transporter ATP-binding protein -
  IQ863_RS01130 - 182062..183018 (+) 957 WP_115654342.1 siderophore ABC transporter substrate-binding protein -
  IQ863_RS01135 - 183061..183327 (+) 267 Protein_228 manganese catalase family protein -
  IQ863_RS01140 - 183583..183723 (+) 141 WP_014459290.1 hypothetical protein -
  IQ863_RS01145 - 184192..185271 (-) 1080 WP_243556522.1 PrsW family intramembrane metalloprotease -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34993.27 Da        Isoelectric Point: 9.9188

>NTDB_id=500431 IQ863_RS01115 WP_014459287.1 179396..180346(+) (ceuB) [Priestia megaterium strain N447-3]
MKFYQLILVFAVLAVLSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIVAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=500431 IQ863_RS01115 WP_014459287.1 179396..180346(+) (ceuB) [Priestia megaterium strain N447-3]
TTGAAGTTTTATCAGTTAATTCTTGTATTTGCTGTACTAGCGGTTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGCATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACAATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCGTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGTAGTATCGTAAGTTCCTTAGCTACCTTCATTGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGATTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAGTCGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGTG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTGTCGCTTATTACGTCGATTACGATTTTGACTGTTGGCATG
CTGCCTTTCTTAGGATTAATCATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGCAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATCTCTATTG
GGTTAATGGTAGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.145

95.886

0.5