Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IQ680_RS17855 Genome accession   NZ_CP064266
Coordinates   3494222..3494500 (+) Length   92 a.a.
NCBI ID   WP_098337872.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489222..3499500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS17820 - 3489435..3489824 (+) 390 WP_243521802.1 cupin domain-containing protein -
  IQ680_RS17825 - 3489821..3490258 (+) 438 WP_243521803.1 GNAT family N-acetyltransferase -
  IQ680_RS17830 - 3490509..3490963 (+) 455 Protein_3423 GNAT family N-acetyltransferase -
  IQ680_RS17835 - 3491363..3491947 (-) 585 WP_243521804.1 HAD-IA family hydrolase -
  IQ680_RS17840 - 3492258..3492839 (+) 582 WP_243521805.1 DUF4256 domain-containing protein -
  IQ680_RS17845 - 3493098..3493508 (+) 411 Protein_3426 restriction endonuclease -
  IQ680_RS17850 - 3493808..3493978 (-) 171 WP_170959778.1 hypothetical protein -
  IQ680_RS17855 abrB 3494222..3494500 (+) 279 WP_098337872.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IQ680_RS17860 - 3494975..3495226 (+) 252 WP_243521806.1 hypothetical protein -
  IQ680_RS17865 - 3495476..3495631 (-) 156 WP_396124445.1 Spo0E family sporulation regulatory protein-aspartic acid phosphatase -
  IQ680_RS17870 - 3496014..3497966 (+) 1953 WP_243521807.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  IQ680_RS17875 - 3498059..3498345 (+) 287 Protein_3432 IS6 family transposase -
  IQ680_RS17880 - 3498601..3499389 (+) 789 Protein_3433 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10162.92 Da        Isoelectric Point: 6.9819

>NTDB_id=500422 IQ680_RS17855 WP_098337872.1 3494222..3494500(+) (abrB) [Bacillus pseudomycoides strain N451-2]
MKSTGVTRKLDQLGRIVIPMELRRTLAIEEKTPLEIYVEGEKIILKKYEAHGACAITGEVSDKNISLADGKITLSQAGAE
LIIEELQKNLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=500422 IQ680_RS17855 WP_098337872.1 3494222..3494500(+) (abrB) [Bacillus pseudomycoides strain N451-2]
ATGAAATCAACAGGAGTAACTCGAAAATTAGATCAATTAGGACGTATAGTTATACCAATGGAGTTAAGACGCACGCTGGC
AATTGAAGAAAAGACACCATTAGAGATTTATGTAGAAGGTGAAAAGATTATCTTGAAAAAATATGAAGCGCATGGTGCTT
GTGCAATAACAGGGGAAGTATCTGATAAAAATATTTCGTTAGCAGACGGAAAGATTACGCTAAGCCAAGCAGGTGCAGAG
CTTATAATAGAGGAATTACAGAAGAATCTTGTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-51)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

64.444

97.826

0.63