Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IQ680_RS15500 Genome accession   NZ_CP064266
Coordinates   3011762..3012364 (-) Length   200 a.a.
NCBI ID   WP_243521382.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3006762..3017364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS15480 dnaD 3007106..3007813 (+) 708 WP_243521378.1 DNA replication protein DnaD -
  IQ680_RS15485 nth 3007829..3008476 (+) 648 WP_243521379.1 endonuclease III -
  IQ680_RS15490 - 3008482..3009000 (+) 519 WP_243521380.1 YpoC family protein -
  IQ680_RS15495 - 3009024..3011696 (-) 2673 WP_243521381.1 PBP1A family penicillin-binding protein -
  IQ680_RS15500 recU 3011762..3012364 (-) 603 WP_243521382.1 Holliday junction resolvase RecU Machinery gene
  IQ680_RS15505 - 3012468..3013493 (+) 1026 WP_243521384.1 DUF2515 domain-containing protein -
  IQ680_RS15510 - 3013900..3014142 (+) 243 WP_098337005.1 hypothetical protein -
  IQ680_RS15515 - 3014176..3014502 (+) 327 WP_098337024.1 YppE family protein -
  IQ680_RS15520 - 3014528..3014719 (-) 192 WP_006094322.1 YppF family protein -
  IQ680_RS15525 - 3014895..3015413 (+) 519 WP_243521385.1 YppG family protein -
  IQ680_RS15530 - 3015565..3016098 (+) 534 WP_243521386.1 CotD family spore coat protein -
  IQ680_RS15535 - 3016160..3016714 (+) 555 WP_243521387.1 DUF1273 domain-containing protein -
  IQ680_RS15540 gpsB 3016812..3017147 (+) 336 WP_243521388.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23521.81 Da        Isoelectric Point: 9.3794

>NTDB_id=500421 IQ680_RS15500 WP_243521382.1 3011762..3012364(-) (recU) [Bacillus pseudomycoides strain N451-2]
MTIRYPNGKRYNQALQPQKTQFKEHTYGNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIKHMEQVIAHNGIAFVIIKFTLYDEFYLLDAKHVISFWNRQ
DAGGRKSIKKQEIEEHGYLLSCGYHPRIDYIRVLDMAYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=500421 IQ680_RS15500 WP_243521382.1 3011762..3012364(-) (recU) [Bacillus pseudomycoides strain N451-2]
ATGACCATTCGGTATCCAAACGGAAAAAGGTATAATCAAGCATTACAGCCTCAAAAAACACAATTTAAAGAACATACTTA
TGGTAATAGAGGTATGTCTCTTGAAGAGGAGCTAAATGAAACAAATCAATATTATTTAACCCATAATATCGCATGTGTAC
ATAAAAAACCCACCCCTCTTCAAATTGTCAAAGTGGATTACCCCGCTCGAAGTGCTGCCGTTGTGAAAGAAGCTTATTTT
AAACAACCTTCTACAACGGACTATAACGGTGTATACAAGGGAAAATACATTGACTTCGAAGCGAAAGAAACAAAAAATAA
AACAAGTTTTCCACTGCAAAATTTTCATCTTCATCAAATTAAGCATATGGAACAGGTAATAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACGCTTTATGATGAATTTTATTTACTCGATGCAAAACATGTCATTTCATTTTGGAATCGCCAA
GATGCTGGTGGACGCAAATCGATTAAGAAACAAGAAATCGAAGAGCATGGATACTTGTTATCATGCGGTTATCACCCTCG
AATCGATTATATTCGTGTACTAGACATGGCTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625