Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IQ680_RS14160 Genome accession   NZ_CP064266
Coordinates   2758364..2758687 (-) Length   107 a.a.
NCBI ID   WP_098337534.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2753364..2763687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS14130 sipW 2754048..2754623 (+) 576 WP_016113886.1 signal peptidase I SipW -
  IQ680_RS14135 - 2754721..2754874 (+) 154 Protein_2687 TasA family protein -
  IQ680_RS14140 - 2755112..2755900 (+) 789 WP_243521202.1 DUF4047 domain-containing protein -
  IQ680_RS14145 - 2756109..2756699 (+) 591 WP_006094072.1 CalY family protein -
  IQ680_RS14150 - 2756773..2757441 (+) 669 WP_098337533.1 TasA family protein -
  IQ680_RS14155 calY 2757672..2758265 (+) 594 WP_003196030.1 biofilm matrix protein CalY -
  IQ680_RS14160 sinR 2758364..2758687 (-) 324 WP_098337534.1 helix-turn-helix domain-containing protein Regulator
  IQ680_RS14165 - 2758778..2758909 (-) 132 WP_003196032.1 anti-repressor SinI family protein -
  IQ680_RS14170 - 2759277..2761661 (+) 2385 WP_243521203.1 immune inhibitor A domain-containing protein -
  IQ680_RS14175 - 2761990..2763357 (+) 1368 WP_243521204.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12453.27 Da        Isoelectric Point: 9.6883

>NTDB_id=500419 IQ680_RS14160 WP_098337534.1 2758364..2758687(-) (sinR) [Bacillus pseudomycoides strain N451-2]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDTLLHDETPSENQLDSEWTHLV
KEAMNSGVSKEQFREFLEFTKWKRNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=500419 IQ680_RS14160 WP_098337534.1 2758364..2758687(-) (sinR) [Bacillus pseudomycoides strain N451-2]
ATGATAGGAGAACGTATAAAACGCCTTCGGTTGCAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAAGCAGGTGTTGC
AAAGTCTTATATTAGTTCCATTGAACGTAATTTACAAAAGAACCCTTCCATTCAATTTCTCGAAAAAATTGCTAATGTTC
TGCAAATTCCCGTGGATACGCTCCTTCATGACGAAACACCATCCGAAAATCAATTGGATTCGGAATGGACACATCTCGTC
AAAGAAGCCATGAACTCCGGTGTATCAAAAGAACAATTTCGTGAATTTTTAGAGTTTACAAAATGGAAGAGAAACCAGAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.055

100

0.673