Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IQ680_RS07855 Genome accession   NZ_CP064266
Coordinates   1491576..1491860 (-) Length   94 a.a.
NCBI ID   WP_026593102.1    Uniprot ID   A0A1H3SH03
Organism   Bacillus pseudomycoides strain N451-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486576..1496860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS07820 tmk 1486732..1487358 (+) 627 WP_243525396.1 dTMP kinase -
  IQ680_RS07825 holB 1487394..1488377 (+) 984 WP_243525397.1 DNA polymerase III subunit delta' -
  IQ680_RS07830 - 1488383..1489210 (+) 828 WP_243525398.1 stage 0 sporulation family protein -
  IQ680_RS07835 yabA 1489225..1489575 (+) 351 WP_000412052.1 DNA replication initiation control protein YabA -
  IQ680_RS07840 - 1489694..1490434 (+) 741 WP_243525399.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IQ680_RS07845 - 1490421..1490711 (+) 291 WP_098338933.1 GIY-YIG nuclease family protein -
  IQ680_RS07850 rsmI 1490680..1491555 (+) 876 WP_243525400.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IQ680_RS07855 abrB 1491576..1491860 (-) 285 WP_026593102.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IQ680_RS07860 metG 1492224..1494221 (+) 1998 WP_243525401.1 methionine--tRNA ligase -
  IQ680_RS07865 - 1494401..1495168 (+) 768 WP_243525402.1 TatD family hydrolase -
  IQ680_RS07870 rnmV 1495450..1496007 (+) 558 WP_243525403.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10458.17 Da        Isoelectric Point: 5.1969

>NTDB_id=500403 IQ680_RS07855 WP_026593102.1 1491576..1491860(-) (abrB) [Bacillus pseudomycoides strain N451-2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQQYIQAAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=500403 IQ680_RS07855 WP_026593102.1 1491576..1491860(-) (abrB) [Bacillus pseudomycoides strain N451-2]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGCCGTGTTGTAATTCCAATTGAATTACGTCGTACATTAGG
TATTGCTGAAAAGGATGCTCTTGAAATTTACGTTGATGACGAAAAAATCATCCTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTTTCTTTAGCTGAAGGTAAAATTATTTTAAGCAAAGAAGGCGCTGAA
CAAGTTTTAAACGAACTTCAACAGTATATTCAAGCAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3SH03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851