Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECW_RS05455 Genome accession   NC_017635
Coordinates   1129324..1129953 (+) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli W     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124324..1134953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECW_RS05430 (ECW_m1065) ycbZ 1124725..1126485 (-) 1761 WP_000156524.1 Lon protease family protein -
  ECW_RS05435 (ECW_m1066) matP 1126671..1127123 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECW_RS05440 (ECW_m1067) ompA 1127199..1128239 (-) 1041 WP_000750416.1 porin OmpA -
  ECW_RS05450 (ECW_m1068) sulA 1128596..1129105 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECW_RS05455 (ECW_m1069) sxy/tfoX 1129324..1129953 (+) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECW_RS05460 (ECW_m1070) yccS 1129916..1132078 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ECW_RS05465 (ECW_m1071) yccF 1132088..1132534 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECW_RS05470 (ECW_m1072) helD 1132657..1134711 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=50040 ECW_RS05455 WP_000793791.1 1129324..1129953(+) (sxy/tfoX) [Escherichia coli W]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=50040 ECW_RS05455 WP_000793791.1 1129324..1129953(+) (sxy/tfoX) [Escherichia coli W]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment