Detailed information NTG0500394

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: IQ680_RS06005
• Genome accession: NZ_CP064266
• Coordinates: 1102472..1103818 (-)
• Length: 448 a.a.
• NCBI ID: WP_243526418.1
• Uniprot ID: -
• Organism: Bacillus pseudomycoides strain N451-2
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1097472..1108818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQ680_RS05985	secA	1097579..1100089 (-)	2511	WP_098336643.1	preprotein translocase subunit SecA	-
IQ680_RS05990	hpf	1100434..1100976 (-)	543	WP_098336642.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
IQ680_RS05995	cspC	1101444..1101641 (-)	198	WP_001162040.1	cold shock protein CspC	-
IQ680_RS06000	-	1101768..1102472 (-)	705	WP_243525162.1	ComF family protein	-
IQ680_RS06005	comFA	1102472..1103818 (-)	1347	WP_243526418.1	DEAD/DEAH box helicase	Machinery gene
IQ680_RS06010	-	1104104..1105517 (-)	1414	Protein_1176	NlpC/P60 family protein	-
IQ680_RS06015	-	1105665..1105979 (-)	315	WP_000400853.1	helix-turn-helix domain-containing protein	-
IQ680_RS06020	-	1106293..1107135 (-)	843	WP_243525163.1	DegV family protein	-
IQ680_RS06025	-	1107376..1108017 (+)	642	WP_098336636.1	YigZ family protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 51204.68 Da
• Isoelectric Point: 9.6275

>NTDB_id=500394 IQ680_RS06005 WP_243526418.1 1102472..1103818(-) (comFA) [Bacillus pseudomycoides strain N451-2]
MLAGRQMLQEELSLSKDELDRLERQGDITLVKGVIKKSSRYICQRCGNIEQRLFAPFLCKRCSQMCTYCRKCITMGRVGE
CTVLVRGIKDIEWRALPNSLRWEGQLSPGQDRAARGVTEALRQKESFFIWAVCGAGKTEMLFYGIEEALKNGERVCIATP
RTDVVLELAPRLRTVFPNVSIAALYGGSLDHEKEARLLVSTMHQLLRYYKAFDVMIVDEIDAFPYVMDKMLQYAVEQASK
DRVAKIYLTATPEETWKRKLWNGKQQGVIISGRYHRHPLPVPRFEWCGNWRKTLKRKEIPPVVLKWLKYHLLKQSPIFLF
VPHVNYIDEVSTLLKALDNRIEGVHAEDPKRKEKVAAFRKGNIPLLVTTTILERGVTVEDLQVAVLGAEEGIFSESALVQ
IAGRVGRSHHKPDGDIFYFHYGKTEAMVGAKKHIQSMNKRAKQEGLID

Nucleotide

• Length: 1347 bp

>NTDB_id=500394 IQ680_RS06005 WP_243526418.1 1102472..1103818(-) (comFA) [Bacillus pseudomycoides strain N451-2]
ATACTAGCAGGAAGGCAGATGTTACAAGAAGAGCTTTCGTTATCAAAAGATGAATTAGATCGCTTGGAAAGACAAGGAGA
TATCACTTTAGTAAAAGGTGTAATCAAGAAATCTTCACGCTATATATGCCAGCGCTGTGGAAATATAGAGCAACGGTTAT
TTGCTCCGTTTTTATGTAAAAGATGTAGCCAAATGTGTACGTATTGCCGAAAATGTATCACGATGGGGCGAGTCGGAGAA
TGTACAGTGCTCGTTCGAGGTATAAAAGATATAGAGTGGAGGGCTTTGCCGAATTCTTTACGCTGGGAAGGCCAATTATC
ACCTGGACAGGATAGAGCAGCTAGAGGAGTAACCGAAGCATTGCGCCAAAAAGAATCCTTTTTCATTTGGGCAGTATGCG
GAGCTGGTAAGACGGAGATGCTTTTTTATGGTATAGAAGAGGCGCTCAAAAATGGAGAGCGGGTTTGTATTGCAACGCCG
CGGACGGATGTCGTGTTAGAGCTAGCCCCCCGTTTACGAACTGTTTTTCCAAATGTATCAATTGCGGCACTATATGGCGG
TAGTTTAGATCATGAAAAGGAGGCAAGACTCCTCGTGTCCACAATGCATCAGTTACTTCGTTATTACAAGGCATTCGATG
TTATGATTGTGGATGAAATTGATGCTTTTCCATATGTGATGGACAAGATGTTACAGTATGCGGTAGAACAAGCGAGTAAA
GATCGTGTAGCAAAAATTTATTTAACTGCCACTCCGGAGGAAACATGGAAACGTAAGTTATGGAATGGGAAACAACAAGG
TGTAATTATTTCAGGGCGTTACCACCGTCATCCTTTGCCAGTTCCTAGGTTCGAGTGGTGCGGTAATTGGAGAAAAACAC
TGAAGCGAAAAGAAATCCCGCCTGTTGTTTTGAAATGGTTAAAGTATCATCTCCTCAAACAATCCCCTATTTTTCTATTT
GTTCCCCATGTAAATTATATCGATGAAGTAAGCACATTATTAAAAGCGTTAGATAATCGAATTGAAGGCGTTCATGCAGA
GGATCCAAAGCGAAAAGAAAAGGTAGCGGCTTTTCGAAAAGGAAATATCCCATTATTAGTAACGACAACAATCTTGGAGC
GAGGTGTAACAGTAGAAGATTTGCAAGTTGCGGTGTTAGGGGCGGAAGAGGGCATTTTTTCGGAAAGTGCACTTGTACAA
ATTGCTGGTAGGGTCGGTAGAAGTCATCATAAGCCAGATGGTGATATCTTTTATTTTCATTATGGAAAAACAGAAGCAAT
GGTGGGCGCGAAAAAACATATCCAATCTATGAATAAGAGGGCAAAGCAAGAAGGACTGATAGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

• Type III restriction enzyme, res subunit (ResIII) (105-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.357	98.661	0.507
comFA	Latilactobacillus sakei subsp. sakei 23K	39.341	100	0.4