Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IQ680_RS00070 Genome accession   NZ_CP064266
Coordinates   15035..15469 (-) Length   144 a.a.
NCBI ID   WP_243524087.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 10035..20469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS00055 - 10844..11398 (+) 555 WP_243524081.1 PadR family transcriptional regulator -
  IQ680_RS00060 metE 12125..14413 (+) 2289 WP_243524083.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  IQ680_RS00065 comJ 14603..14992 (-) 390 WP_243524085.1 competence protein ComJ -
  IQ680_RS00070 nucA/comI 15035..15469 (-) 435 WP_243524087.1 DNA-entry nuclease Machinery gene
  IQ680_RS00075 - 15710..16453 (+) 744 WP_243524089.1 DUF3967 domain-containing protein -
  IQ680_RS00080 - 16698..17972 (-) 1275 WP_098336087.1 HAMP domain-containing sensor histidine kinase -
  IQ680_RS00085 - 18282..18482 (+) 201 WP_000929274.1 hypothetical protein -
  IQ680_RS00090 - 18583..19746 (+) 1164 WP_243524091.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16070.63 Da        Isoelectric Point: 9.6677

>NTDB_id=500381 IQ680_RS00070 WP_243524087.1 15035..15469(-) (nucA/comI) [Bacillus pseudomycoides strain N451-2]
MKQLKGIIISIIAILSILVVVYEAFIPAEPKNKKEVTYDQVLEFPKERYPETGKHIADAMKEGHSKVCTIDRSGAADRRK
LSLAPYSAKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFVVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=500381 IQ680_RS00070 WP_243524087.1 15035..15469(-) (nucA/comI) [Bacillus pseudomycoides strain N451-2]
ATGAAACAGTTAAAAGGCATTATCATCTCGATTATTGCGATTCTTTCTATTTTGGTTGTTGTCTATGAAGCGTTTATACC
GGCAGAACCAAAGAACAAAAAAGAAGTTACATATGATCAAGTTCTAGAATTTCCAAAAGAACGCTATCCTGAAACGGGGA
AACATATTGCAGATGCGATGAAAGAAGGGCATTCTAAAGTGTGCACGATTGATCGAAGTGGTGCAGCTGATAGAAGAAAA
TTGTCCCTAGCTCCATATTCAGCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCAATGTGTAAAGAGGGTGGAAA
AGGTGCGCATATTGAATATATTAGTCCAGCCGATAATAGAGGTGCAGGTTCATGGGTTGGAAATAAGCTAGATAAGTATC
CAGATGGTACACGCGTGAAATTTGTGGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.167

83.333

0.535