Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KE3_RS03485 Genome accession   NC_021900
Coordinates   662268..664466 (+) Length   732 a.a.
NCBI ID   WP_020916511.1    Uniprot ID   A0AB33AL27
Organism   Streptococcus lutetiensis 033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 657268..669466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS10130 (KE3_0704) - 657285..657461 (-) 177 WP_020916505.1 DUF3042 family protein -
  KE3_RS03460 (KE3_0705) miaA 657649..658548 (+) 900 WP_020916506.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  KE3_RS03465 (KE3_0706) hflX 658638..659876 (+) 1239 WP_020916507.1 GTPase HflX -
  KE3_RS03470 (KE3_0707) - 659869..660507 (+) 639 WP_020916508.1 cystathionine gamma-lyase -
  KE3_RS03475 (KE3_0708) rnz 660548..661477 (+) 930 WP_020916509.1 ribonuclease Z -
  KE3_RS03480 (KE3_0709) - 661474..662232 (+) 759 WP_020916510.1 SDR family NAD(P)-dependent oxidoreductase -
  KE3_RS03485 (KE3_0710) recJ 662268..664466 (+) 2199 WP_020916511.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KE3_RS03490 (KE3_0711) bsh 664636..665613 (+) 978 WP_020916512.1 choloylglycine hydrolase -
  KE3_RS03495 (KE3_0712) - 665716..666234 (+) 519 WP_004231134.1 adenine phosphoribosyltransferase -
  KE3_RS03500 (KE3_0713) metA 666342..667286 (+) 945 WP_020916513.1 homoserine O-succinyltransferase -
  KE3_RS03505 (KE3_0714) - 667365..668039 (+) 675 WP_020916514.1 DnaD domain-containing protein -
  KE3_RS03510 (KE3_0715) nth 668039..668689 (+) 651 WP_020916515.1 endonuclease III -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 81977.73 Da        Isoelectric Point: 4.4182

>NTDB_id=50036 KE3_RS03485 WP_020916511.1 662268..664466(+) (recJ) [Streptococcus lutetiensis 033]
MITSKYNWKNIEKEPDDGFFEVTKKENITALASKILYSRGVDNDEKLAQFLSNDLSQLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFVDGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQ
SQGVDVIVTDHHGLPAELPDAFAIVHPEYPEADYPFRYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGRLDDPNRAIELLTGFDDEEALSIAQMINAKN
EERKEIVQKIYDEAMGMVDLDKPVQVLAKEGWHPGVLGIVAGRILEHIAQPVIVLNIEDGMAKGSARSIEAINIFHALDD
HRDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDLDTVKSLEKIAPFGMDNAKP
VFEIKDLTVKQARTMGQNGTHLKLKIAQGSTAVDLVAFNQGHLVQEFQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVD
GVQLIDIRSKNASLPERVPVLSEDTSASEVVVLDIPDKAEELKSLFVGRQFDAVYFKNHIKRAYYLTGYGTREQFAKLYK
TIYQFPEFDVRYKLKELSHYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKGAEKRSISDSKIYQNLKQEVKFQELMAL
GTPQEIYDWLMN

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=50036 KE3_RS03485 WP_020916511.1 662268..664466(+) (recJ) [Streptococcus lutetiensis 033]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATGATGGCTTTTTTGAAGTGACAAAAAAAGAAAA
TATAACGGCATTAGCCAGCAAAATCCTATACAGTCGTGGCGTTGACAACGACGAAAAACTAGCTCAATTTTTATCGAATG
ATTTGTCACAACTTCACGATCCATATCTTTTGCACGATATGGACAAGGCAGTTGCCCGCATTCGTCAAGCTATTGAAAAT
TATGAACAAATCTTGGTTTATGGTGACTATGATGCCGACGGGATGACCAGCGCTAGTATCATGAAAGAAGCGTTGGAAAT
GCTTGGGGCTGAGGTTCAAGTCTATCTTCCTAACCGATTTGTTGATGGTTATGGACCAAATGAATCGGTTTATAAGTATT
TCATCGAGCAACAACAGGTTTCTTTGATTATTACGGTGGATAATGGCGTAGCTGGACATGAAGCTATTAGCTATGCACAA
AGTCAAGGAGTAGATGTCATTGTTACTGACCACCATGGCTTACCAGCAGAGCTTCCAGACGCATTTGCCATTGTACATCC
AGAGTATCCAGAAGCTGACTATCCTTTTAGATATTTAGCAGGATGTGGTGTAGCCTTCAAAGTGGCTTGTGCCCTATTAG
AATCCATCCCAACCGAAATGTTAGACTTAGTTGCTATCGGAACGATTGCCGATATGGTTAGTCTAACAGATGAAAATCGT
ATCATGGTCAAGGTTGGGCTTGAAATGCTCAAGCAGACCGAACGCATTGGTCTCATGGAGCTTATGAAAGTATCTGATAT
TGACATGTCAGATGTTAATGAGGAAACTGTTGGGTTTAAAATTGCACCGCAGCTAAATGCTCTTGGTCGTCTAGATGATC
CAAATCGAGCTATTGAATTATTGACTGGTTTTGATGATGAAGAAGCGCTAAGTATTGCGCAAATGATTAATGCCAAGAAT
GAAGAACGTAAAGAAATTGTTCAAAAAATTTACGATGAAGCCATGGGCATGGTTGATCTTGACAAGCCTGTGCAGGTGTT
GGCAAAAGAAGGCTGGCATCCAGGTGTTCTAGGAATTGTCGCTGGTCGTATTTTGGAGCACATTGCTCAGCCAGTTATTG
TCTTAAACATTGAAGACGGTATGGCAAAAGGCTCTGCTAGAAGTATTGAGGCAATCAATATCTTCCATGCACTTGATGAC
CACCGTGATTTATTTGAAGCTTTTGGTGGACATGCTGGTGCTGCAGGAATGACCTTGCCAGTTGATAACTTAGAGCAATT
GTCACAAGTTTTATGTGATTACATTGCTGAAAATGATATTAATTTAGCTCAGAAAAAGACTTTGATCATTGATGAAGTGC
TGGACTTGTCAGAAATTGATTTGGACACTGTTAAAAGTCTTGAGAAGATCGCACCTTTTGGGATGGATAATGCTAAGCCA
GTCTTTGAAATCAAAGACCTTACCGTTAAACAAGCACGTACCATGGGGCAAAATGGCACTCACTTGAAATTAAAAATTGC
TCAAGGAAGTACGGCGGTTGACCTTGTTGCCTTTAACCAAGGTCATTTGGTACAAGAATTCCAGCAAGCGCAGAACCTGT
GCCTTGCCGTTACTTTGTCAATCAACAAATGGAACGGGCAAACCACAGTTCAGTTGATGCTTGAAGACGCGCGTGTTGAC
GGCGTTCAGTTGATTGATATTCGTTCCAAAAATGCCAGTCTTCCTGAACGTGTTCCTGTTTTGAGTGAAGACACCAGTGC
CAGTGAAGTGGTTGTACTAGATATTCCTGATAAGGCTGAAGAACTCAAATCCCTTTTTGTCGGTCGACAATTTGATGCCG
TTTACTTTAAAAATCACATCAAACGAGCTTATTATTTGACTGGCTATGGAACTCGCGAACAATTTGCTAAGTTGTATAAA
ACGATTTATCAATTCCCTGAATTTGATGTTCGTTACAAGCTGAAAGAATTGAGTCATTATCTTAATATTCCTGATATTCT
TTTGGTCAAAATGATTCAAATTTTTGATGAATTGGATTTTGTAACCATCACAGATGGAGTGATGGTCGTCAATAAAGGTG
CTGAGAAACGCAGTATTTCTGATAGTAAAATTTATCAAAATCTTAAGCAAGAAGTGAAATTTCAAGAGCTCATGGCACTT
GGAACGCCACAAGAAATTTATGACTGGTTGATGAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-730)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AL27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.3

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

37.935

100

0.402

Multiple sequence alignment