Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   KE3_RS03435 Genome accession   NC_021900
Coordinates   647740..650982 (+) Length   1080 a.a.
NCBI ID   WP_020916500.1    Uniprot ID   A0AB33AL05
Organism   Streptococcus lutetiensis 033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 642740..655982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS03420 (KE3_0696) pheS 643518..644561 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  KE3_RS03425 (KE3_0697) - 644594..645118 (+) 525 WP_020916498.1 GNAT family N-acetyltransferase -
  KE3_RS03430 (KE3_0698) pheT 645188..647593 (+) 2406 WP_020916499.1 phenylalanine--tRNA ligase subunit beta -
  KE3_RS03435 (KE3_0699) rexB 647740..650982 (+) 3243 WP_020916500.1 ATP-dependent nuclease subunit B Machinery gene
  KE3_RS03440 (KE3_0700) rexA 650972..654598 (+) 3627 WP_020916501.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KE3_RS03445 (KE3_0701) - 654693..655838 (-) 1146 WP_020916502.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124542.18 Da        Isoelectric Point: 4.9857

>NTDB_id=50034 KE3_RS03435 WP_020916500.1 647740..650982(+) (rexB) [Streptococcus lutetiensis 033]
MKLLYTDIQFDMTEILARKAMEEAKAGKRVFYIAPNSLSFEKERAVLELLPDHASFAITITRFAQMARYFVLNEPQTKET
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTELHTAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAFFTKQVASGQLDDALENVVLVIDGFTRFSAEEEDLVSLLEEKCAQVIIGTYSSQKAYKATFSTGNVYQAS
LDFLRSLAAKFQTQSEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTQDDKKHYAIWDVINQKEEVEHVAKAIRHKLH
QGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRMEDVVNLLKTGLYGSFTQ
DDLDLFEQYLIYADIKGQSKFGKEFTIAYKGEEHLAYINCMREQIMAPLLGLFKAQKQFGSSLLEKLMTFLGAISLPENL
ERMVATFSENDQEKHEQVWRTFTGILEQFQTIFGQEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNK
FVFALGMTQSHFPKIAQNRSLISDEERAKVNETTSDNQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIANESEDK
ESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLVNDGIEL
PLIKDNMQTKPVSDEVIETRFPSDEPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDA
SNQPFDNKLDRAIQTTNAEDAFKFIYEEDEESRYSLTVLEDIARSTATILRQDTQIQVENEEEPFELMLANAVRIRGIID
RVDRLSDGSLGVVDYKSSNNTFDIQKFYNGLNPQLVTYMQALRDKKNKSESDKIFGAMYLHMQEPKVDLSSVATTEKILE
NLSKELRYRGLFLEDEKGYLSNGNYHLNDSVYTQEELDILLAYNQKLFLQAAEQIKQGYFLINPYSEDGKTVKGDQLKAI
TRFEADRHMPYARKWFKLPRKDRRQGFLSLMQEEEEKDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=50034 KE3_RS03435 WP_020916500.1 647740..650982(+) (rexB) [Streptococcus lutetiensis 033]
ATGAAATTATTATATACAGATATTCAGTTTGATATGACTGAAATTTTGGCAAGAAAAGCGATGGAAGAGGCTAAAGCTGG
TAAGCGTGTTTTCTACATCGCTCCAAACTCTTTGTCTTTTGAAAAGGAAAGGGCGGTTCTGGAACTTTTACCTGACCACG
CGTCTTTTGCCATTACCATTACGCGTTTTGCTCAAATGGCACGCTATTTTGTCTTAAATGAGCCTCAGACCAAAGAAACG
ATTGATGATAATGGATTAGCTATGATTTTTTATCGTGCGCTGTCTCATTTTTCGGATACGGATTTGAAAGTTTTTGGGCG
TTTAAAGCAAGATACGAATTTCATCAAGCAATTGGTTGATTTGTATAAGGAATTAAAAACGGCTAACATGACCGTGCTCG
ACTTGACAGAATTGCATACGGCTGAGAAGCAAGAAGATTTGGTGAAAATATTTTTGGCGGTTAATGATATTTTGTTAGCC
AATCAGTATGACAATCAGTCAAAAATTGCATTTTTTACTAAGCAGGTAGCATCGGGTCAGTTGGATGATGCGCTTGAAAA
TGTTGTTTTGGTTATCGACGGTTTTACACGTTTTTCAGCAGAAGAGGAAGATTTGGTCAGCCTTTTAGAAGAAAAATGTG
CTCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCTTATAAGGCGACATTTTCAACTGGGAATGTCTATCAGGCAAGT
TTGGATTTTTTACGTTCTTTGGCAGCTAAATTTCAAACACAGTCAGAATATGTTGAGAGCTCTCAAAAATCTCAAGAAGC
ATTTGCTAAGTTGTCAAAACTCTTTGAAGCTAAGCACGACTTTACAACATCAGATATCACCTTAACGCAAGATGATAAGA
AACATTATGCTATCTGGGATGTTATTAATCAAAAAGAAGAAGTTGAGCATGTGGCAAAGGCTATTCGTCATAAACTTCAC
CAAGGCTATCGCTATAAAGATATTTTGGTGCTTTTGGGTGATGTGGATAGCTATCGTCTGCAAATCGGCAAAATTTTTGA
TAAATATGAAATTCCCTATTATTTTGGAAAAGCAGAGTCGATGAGCGATCATCCTTTGGTGCATTTTATTGATTCCTTGG
AGCGCGTGAAACGTTACCGTTTTCGTATGGAAGATGTGGTTAATCTTTTGAAAACAGGACTTTATGGTTCCTTCACTCAA
GATGATTTAGACCTTTTTGAGCAATATCTGATTTACGCTGATATTAAAGGACAAAGTAAATTTGGCAAGGAGTTCACGAT
TGCTTACAAGGGTGAAGAACACTTAGCTTATATTAATTGCATGCGCGAGCAAATCATGGCGCCTTTGCTAGGTTTATTTA
AGGCACAAAAGCAGTTTGGCTCAAGCCTGCTTGAAAAATTGATGACTTTCTTGGGTGCTATTTCTTTGCCTGAGAATTTA
GAGCGTATGGTAGCTACCTTCTCAGAAAATGACCAGGAAAAGCACGAGCAAGTTTGGCGAACATTTACTGGCATTCTCGA
GCAATTTCAAACGATTTTTGGACAAGAAAAATTGTCTTTGGATGAATTTTTAGCTCTTTTAAGAAGCGGTATGTTGGCTG
CCCAGTACCGCGTAGTGCCAGCAAGTGTTGATGTGGTTTCTGTAAAATCTTATGATTTGGTTGAGCCACATACCAATAAA
TTTGTCTTTGCACTTGGCATGACGCAGTCGCATTTCCCAAAGATTGCGCAAAATCGTAGCTTGATTTCAGATGAAGAACG
TGCCAAGGTTAATGAGACAACATCTGACAATCAACGTTTTGATGTGATTAGTCGTGAAAATATTAAGAAAAATCATTTTG
CTGCTTTGTCATTGTTTAATTCAGCGACGGAAGAATTGGTGCTCAGTTTGCCACAAATTGCTAACGAGTCAGAAGATAAG
GAATCTTCTTATCTTGCGGAATTAGCTAGCTTTGGTGTGCCTGTTTTGGTTAAGGGACGAAATCGTTTGTCGACAGATGC
TGAAGACATTGGAAATTATAAAGCGCTCTTATCTCGTGTGATTGAGGTTAATCGCTTAGCTATTGAAGAAGAACGCGAGC
TTAGCAAAGAAGAGCAGACCTTCTGGTCAGTAGCTGTACGTTATCTTCGTAAAAAACTGGTAAATGACGGTATTGAATTG
CCACTTATTAAGGACAATATGCAGACCAAGCCAGTTTCTGATGAAGTGATTGAGACGCGTTTTCCAAGTGATGAGCCGAT
TAATTTATCTTCATCAGCGGTGACAACTTTCTATAACAATCAGTACAAATATTTCTTACAGTATGTGCTTGGTTTACAAG
AGGTTGAAACCATTCACCCTGACGCTAGAAATCACGGAACATACCTCCATCGTGTCTTTGAATTGGTCATGAAAGATGCT
TCTAACCAGCCGTTTGACAATAAATTAGATCGAGCTATTCAAACAACCAACGCCGAAGATGCTTTCAAATTTATCTACGA
AGAAGACGAGGAAAGCCGCTACTCATTGACAGTCTTAGAAGATATTGCTAGAAGCACGGCAACCATTTTACGTCAGGATA
CTCAGATCCAGGTGGAAAATGAAGAAGAACCTTTTGAATTAATGCTTGCTAATGCAGTTCGTATTCGAGGCATTATTGAC
CGTGTGGATCGTTTGTCAGATGGAAGTCTTGGGGTGGTTGATTACAAATCAAGTAACAATACCTTTGATATTCAAAAATT
CTACAATGGTCTTAATCCGCAATTGGTGACTTATATGCAAGCACTTCGCGATAAAAAAAATAAAAGTGAATCAGATAAGA
TTTTTGGAGCCATGTACCTTCACATGCAAGAGCCAAAAGTAGATTTGTCATCGGTAGCTACTACAGAGAAAATTTTGGAG
AATTTGTCTAAAGAACTTCGCTATCGTGGCTTGTTCTTAGAAGATGAAAAAGGTTATTTATCAAATGGAAATTATCATCT
TAATGATTCTGTTTACACGCAAGAAGAGTTAGATATTTTACTAGCTTATAATCAAAAATTATTCCTTCAAGCAGCTGAGC
AAATTAAACAAGGATACTTTTTGATTAATCCTTACAGTGAGGATGGTAAGACGGTTAAGGGTGACCAATTAAAAGCTATC
ACACGCTTTGAAGCGGACCGCCACATGCCATACGCACGCAAGTGGTTTAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTGATGCAAGAAGAGGAGGAAAAAGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AL05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.167

100

0.442

Multiple sequence alignment