Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IS496_RS17835 Genome accession   NZ_CP064252
Coordinates   3554667..3555263 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain JX-CR-hvKP-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549667..3560263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS496_RS17820 helD 3549875..3551929 (-) 2055 WP_002898429.1 DNA helicase IV -
  IS496_RS17825 - 3552054..3552500 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IS496_RS17830 yccS 3552518..3554653 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IS496_RS17835 sxy/tfoX 3554667..3555263 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  IS496_RS17840 sulA 3555612..3556121 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IS496_RS17845 ompA 3556474..3557544 (+) 1071 WP_062954987.1 porin OmpA -
  IS496_RS17850 matP 3557676..3558128 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IS496_RS17855 - 3558314..3560071 (+) 1758 WP_002898401.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=500325 IS496_RS17835 WP_004150836.1 3554667..3555263(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=500325 IS496_RS17835 WP_004150836.1 3554667..3555263(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51