Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IS501_RS16740 Genome accession   NZ_CP064229
Coordinates   3452286..3452882 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain JX-CR-hvKP-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3447286..3457882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS501_RS16725 helD 3447494..3449548 (-) 2055 WP_014907883.1 DNA helicase IV -
  IS501_RS16730 - 3449673..3450119 (+) 447 WP_014907884.1 YccF domain-containing protein -
  IS501_RS16735 yccS 3450137..3452272 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IS501_RS16740 sxy/tfoX 3452286..3452882 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IS501_RS16745 - 3452973..3453188 (+) 216 WP_009485781.1 hypothetical protein -
  IS501_RS16750 sulA 3453231..3453740 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IS501_RS16755 ompA 3454093..3455163 (+) 1071 WP_002898408.1 porin OmpA -
  IS501_RS16760 matP 3455295..3455747 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IS501_RS16765 - 3455933..3457690 (+) 1758 WP_014907886.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=500206 IS501_RS16740 WP_004179217.1 3452286..3452882(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-6]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=500206 IS501_RS16740 WP_004179217.1 3452286..3452882(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-6]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51