Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IS504_RS17185 Genome accession   NZ_CP064205
Coordinates   3519102..3519698 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain JX-CR-hvKP-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3514102..3524698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS504_RS17170 helD 3514310..3516364 (-) 2055 WP_014907883.1 DNA helicase IV -
  IS504_RS17175 - 3516489..3516935 (+) 447 WP_014907884.1 YccF domain-containing protein -
  IS504_RS17180 yccS 3516953..3519088 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IS504_RS17185 sxy/tfoX 3519102..3519698 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IS504_RS17190 - 3519789..3520004 (+) 216 WP_009485781.1 hypothetical protein -
  IS504_RS17195 sulA 3520047..3520556 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IS504_RS17200 ompA 3520909..3521979 (+) 1071 WP_002898408.1 porin OmpA -
  IS504_RS17205 matP 3522111..3522563 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IS504_RS17210 - 3522749..3524506 (+) 1758 WP_014907886.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=500088 IS504_RS17185 WP_004179217.1 3519102..3519698(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-12]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=500088 IS504_RS17185 WP_004179217.1 3519102..3519698(-) (sxy/tfoX) [Klebsiella pneumoniae strain JX-CR-hvKP-12]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51