Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KE3_RS01580 Genome accession   NC_021900
Coordinates   290941..291696 (+) Length   251 a.a.
NCBI ID   WP_020916187.1    Uniprot ID   A0AB33AJX4
Organism   Streptococcus lutetiensis 033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285941..296696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS01560 (KE3_0317) mreD 286493..287008 (+) 516 WP_020916183.1 rod shape-determining protein MreD -
  KE3_RS01565 (KE3_0318) - 287110..288480 (+) 1371 WP_020916184.1 CHAP domain-containing protein -
  KE3_RS01570 (KE3_0319) - 288621..289592 (+) 972 WP_043894938.1 ribose-phosphate diphosphokinase -
  KE3_RS01575 (KE3_0320) - 289776..290951 (+) 1176 WP_020916186.1 pyridoxal phosphate-dependent aminotransferase -
  KE3_RS01580 (KE3_0321) recO 290941..291696 (+) 756 WP_020916187.1 DNA repair protein RecO Machinery gene
  KE3_RS01585 (KE3_0322) plsX 291833..292828 (+) 996 WP_043894940.1 phosphate acyltransferase PlsX -
  KE3_RS01590 (KE3_0323) - 292846..293088 (+) 243 WP_043894942.1 acyl carrier protein -
  KE3_RS01595 (KE3_0324) purC 293213..293923 (+) 711 WP_020916190.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29229.76 Da        Isoelectric Point: 7.1588

>NTDB_id=50007 KE3_RS01580 WP_020916187.1 290941..291696(+) (recO) [Streptococcus lutetiensis 033]
MQNKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHGSKSRFNLAIQPLTVAKFILKINDTGLSFIEDYKEVDSFKK
INADLFKLSYASYVTSLADAAVPDGVADPQLFAFLKKTLLLIEEGLDYEILTNIFEIQILERFGVSLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYVKDEHRSHLDPNVLYLADRFQAIQFDDLKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGIWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=50007 KE3_RS01580 WP_020916187.1 290941..291696(+) (recO) [Streptococcus lutetiensis 033]
ATGCAAAATAAGGAAACTTACGGTCTTGTCCTCTATAATCGTAATTATCGTGAGGATGATAAGTTAGTTAAAATTTTTAC
CGAGACGAATGGGAAGCACATGTTTTTTGTGAAACACGGTAGTAAATCTCGTTTTAACTTAGCTATTCAACCATTGACGG
TGGCTAAATTTATTTTAAAAATCAATGATACTGGTTTATCTTTTATTGAGGATTACAAGGAAGTTGATTCTTTCAAGAAG
ATTAATGCGGATTTATTTAAGCTATCTTATGCGTCTTATGTGACGTCTCTAGCTGATGCTGCTGTACCAGATGGTGTTGC
AGATCCGCAGTTATTTGCCTTTTTAAAGAAGACTCTTTTGTTGATAGAAGAGGGGCTTGATTACGAGATTTTGACTAATA
TTTTTGAAATTCAGATTTTAGAACGTTTTGGTGTTAGTCTTAATTTTCATGAGTGTGCTTTTTGTCACCGTGTGGGGCTT
CCTTTTGATTTTTCTCACAAGTATTCTGGCTTGCTTTGTCCTGAACATTATGTGAAAGATGAGCATCGTAGTCATCTGGA
TCCGAATGTTCTTTATCTGGCGGATCGTTTTCAGGCGATTCAATTTGACGATTTGAAGACAATTTCTGTTAAGCCAGAGA
TGAAACGAAAATTACGTTTGTTTATTGATGATATTTATGACAATTATGTTGGTCTTCGATTGAAGAGTAAGAAATTCATC
GATGATTTAGGGATTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AJX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.948

100

0.629