Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KKZ13_RS05670 Genome accession   NZ_CP075737
Coordinates   1154668..1156095 (+) Length   475 a.a.
NCBI ID   WP_000980589.1    Uniprot ID   P04995
Organism   Escherichia coli strain CPF6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149668..1161095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ13_RS05635 (KKZ13_05620) - 1149796..1150334 (+) 539 Protein_1109 IS3-like element IS2 family transposase -
  KKZ13_RS05640 (KKZ13_05625) - 1150461..1150598 (-) 138 Protein_1110 transposase domain-containing protein -
  KKZ13_RS05645 (KKZ13_05630) - 1150661..1150843 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KKZ13_RS05650 (KKZ13_05635) tmaR 1150944..1151273 (-) 330 WP_000450409.1 DUF496 family protein -
  KKZ13_RS05655 (KKZ13_05640) yeeA 1151445..1152503 (-) 1059 WP_001200884.1 FUSC family protein -
  KKZ13_RS05660 (KKZ13_05645) sbmC 1152701..1153174 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  KKZ13_RS05665 (KKZ13_05650) dacD 1153293..1154459 (-) 1167 WP_000830160.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KKZ13_RS05670 (KKZ13_05655) sbcB 1154668..1156095 (+) 1428 WP_000980589.1 exodeoxyribonuclease I Machinery gene
  KKZ13_RS05675 (KKZ13_05660) tsuB 1156138..1156365 (-) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KKZ13_RS05680 (KKZ13_05665) tsuA 1156379..1157437 (-) 1059 WP_000492309.1 thiosulfate utilization transporter TsuA/YeeE -
  KKZ13_RS05685 (KKZ13_05670) plaP 1157616..1158974 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KKZ13_RS05690 (KKZ13_05675) yoeI 1158964..1159026 (-) 63 WP_010723108.1 membrane protein YoeI -
  KKZ13_RS05695 (KKZ13_05680) yeeY 1159241..1160170 (-) 930 WP_063090662.1 LysR substrate-binding domain-containing protein -
  KKZ13_RS05700 (KKZ13_05685) yeeZ 1160216..1161040 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=500055 KKZ13_RS05670 WP_000980589.1 1154668..1156095(+) (sbcB) [Escherichia coli strain CPF6]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=500055 KKZ13_RS05670 WP_000980589.1 1154668..1156095(+) (sbcB) [Escherichia coli strain CPF6]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FXX
  PDB 2QXF
  PDB 3C94
  PDB 3C95
  PDB 3HL8
  PDB 3HP9
  PDB 4HCB
  PDB 4HCC
  PDB 4JRP
  PDB 4JRQ
  PDB 4JS4
  PDB 4JS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585