Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KKZ11_RS22945 Genome accession   NZ_CP075731
Coordinates   4763959..4764951 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain CP52E     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4758959..4769951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ11_RS22935 (KKZ11_22840) yieP 4761851..4762543 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  KKZ11_RS22940 (KKZ11_22845) mdtD 4762566..4763993 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  KKZ11_RS22945 (KKZ11_22850) cytR 4763959..4764951 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  KKZ11_RS22950 (KKZ11_22855) rbsK 4764955..4765884 (-) 930 WP_077492166.1 ribokinase -
  KKZ11_RS22955 (KKZ11_22860) rbsB 4766010..4766900 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KKZ11_RS22960 (KKZ11_22865) rbsC 4766925..4767890 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KKZ11_RS22965 (KKZ11_22870) rbsA 4767895..4769400 (-) 1506 WP_089601949.1 ribose ABC transporter ATP-binding protein RbsA -
  KKZ11_RS22970 (KKZ11_22875) rbsD 4769408..4769827 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=500038 KKZ11_RS22945 WP_000224470.1 4763959..4764951(-) (cytR) [Escherichia coli strain CP52E]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=500038 KKZ11_RS22945 WP_000224470.1 4763959..4764951(-) (cytR) [Escherichia coli strain CP52E]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTACTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCACGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGGCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364