Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KKZ11_RS08785 Genome accession   NZ_CP075731
Coordinates   1852685..1854112 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain CP52E     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847685..1859112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ11_RS08755 (KKZ11_08740) yeeZ 1847740..1848564 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KKZ11_RS08760 (KKZ11_08745) yeeY 1848610..1849539 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KKZ11_RS08765 (KKZ11_08750) yoeI 1849754..1849816 (+) 63 WP_010723108.1 membrane protein YoeI -
  KKZ11_RS08770 (KKZ11_08755) plaP 1849806..1851164 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KKZ11_RS08775 (KKZ11_08760) tsuA 1851343..1852401 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  KKZ11_RS08780 (KKZ11_08765) tsuB 1852415..1852642 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KKZ11_RS08785 (KKZ11_08770) sbcB 1852685..1854112 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  KKZ11_RS08790 (KKZ11_08775) dacD 1854321..1855487 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KKZ11_RS08795 (KKZ11_08780) sbmC 1855606..1856079 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KKZ11_RS08800 (KKZ11_08785) yeeA 1856277..1857335 (+) 1059 WP_001200905.1 FUSC family protein -
  KKZ11_RS08805 (KKZ11_08790) tmaR 1857507..1857836 (+) 330 WP_000450409.1 DUF496 family protein -
  KKZ11_RS08810 (KKZ11_08795) - 1857937..1858119 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KKZ11_RS08815 (KKZ11_08800) - 1858182..1858262 (+) 81 Protein_1729 transposase domain-containing protein -
  KKZ11_RS08820 (KKZ11_08805) - 1858608..1858700 (-) 93 Protein_1730 DUF957 domain-containing protein -
  KKZ11_RS08825 (KKZ11_08810) yeeW 1858734..1858928 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=499994 KKZ11_RS08785 WP_000980568.1 1852685..1854112(-) (sbcB) [Escherichia coli strain CP52E]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=499994 KKZ11_RS08785 WP_000980568.1 1852685..1854112(-) (sbcB) [Escherichia coli strain CP52E]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCACAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583