Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IS519_RS13205 Genome accession   NZ_CP064170
Coordinates   2884671..2885189 (+) Length   172 a.a.
NCBI ID   WP_017629423.1    Uniprot ID   A0A7Y7N1I2
Organism   Vibrio crassostreae strain ED395     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879671..2890189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS13195 (IS519_13185) gshA 2882417..2883985 (+) 1569 WP_248639136.1 glutamate--cysteine ligase -
  IS519_RS13200 (IS519_13190) - 2883996..2884646 (+) 651 WP_017629422.1 hypothetical protein -
  IS519_RS13205 (IS519_13195) luxS 2884671..2885189 (+) 519 WP_017629423.1 S-ribosylhomocysteine lyase Regulator
  IS519_RS13210 (IS519_13200) - 2885287..2886558 (-) 1272 WP_019825852.1 CNNM domain-containing protein -
  IS519_RS13215 (IS519_13205) - 2886686..2887480 (-) 795 WP_019825854.1 inner membrane protein YpjD -
  IS519_RS13220 (IS519_13210) ffh 2887681..2889075 (+) 1395 WP_010435884.1 signal recognition particle protein -
  IS519_RS13225 (IS519_13215) rpsP 2889288..2889536 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  IS519_RS13230 (IS519_13220) rimM 2889561..2890115 (+) 555 WP_048612338.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.71 Da        Isoelectric Point: 4.5912

>NTDB_id=499951 IS519_RS13205 WP_017629423.1 2884671..2885189(+) (luxS) [Vibrio crassostreae strain ED395]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=499951 IS519_RS13205 WP_017629423.1 2884671..2885189(+) (luxS) [Vibrio crassostreae strain ED395]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGCTGTCGCACTGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAACAACAAGTGGCTGACGGTTGGTTGGCAGC
GATGAAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCGATCATTGCAGCAGGTATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAATCTATGCTGCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7N1I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884