Detailed information NTG0499948

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IS519_RS13065
• Genome accession: NZ_CP064170
• Coordinates: 2858437..2859417 (+)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio crassostreae strain ED395
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2853437..2864417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS519_RS13035 (IS519_13025)	ispD	2853685..2854386 (+)	702	WP_248639117.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IS519_RS13040 (IS519_13030)	ispF	2854389..2854868 (+)	480	WP_004739053.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IS519_RS13045 (IS519_13035)	truD	2854891..2855937 (+)	1047	WP_248639119.1	tRNA pseudouridine(13) synthase TruD	-
IS519_RS13050 (IS519_13040)	surE	2856019..2856762 (+)	744	WP_052878813.1	5'/3'-nucleotidase SurE	-
IS519_RS13055 (IS519_13045)	-	2856763..2857389 (+)	627	WP_248639121.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IS519_RS13060 (IS519_13050)	nlpD	2857424..2858338 (+)	915	WP_050620526.1	murein hydrolase activator NlpD	-
IS519_RS13065 (IS519_13055)	rpoS	2858437..2859417 (+)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
IS519_RS13070 (IS519_13060)	mutS	2859557..2862118 (-)	2562	WP_248639123.1	DNA mismatch repair protein MutS	-
IS519_RS13075 (IS519_13065)	asrC	2862269..2863270 (-)	1002	WP_048615636.1	sulfite reductase subunit C	-
IS519_RS13080 (IS519_13070)	asrB	2863281..2864081 (-)	801	WP_248639125.1	anaerobic sulfite reductase subunit AsrB	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=499948 IS519_RS13065 WP_017059027.1 2858437..2859417(+) (rpoS) [Vibrio crassostreae strain ED395]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=499948 IS519_RS13065 WP_017059027.1 2858437..2859417(+) (rpoS) [Vibrio crassostreae strain ED395]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCAAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCCACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTATACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCACGTCGTTATAGCAACCGCGGCCT
TGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTAATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GCTTCTCAACCTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCGGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCGCTGTTGGATATCATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGACTACTGGGTTATGAACCGTCAACATTAGAAGAAGTAGGCCGCGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGCCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAACCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837