Detailed information NTG0499938

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IS519_RS11670
• Genome accession: NZ_CP064170
• Coordinates: 2599310..2600314 (-)
• Length: 334 a.a.
• NCBI ID: WP_048605405.1
• Uniprot ID: A0A4U2D2Z2
• Organism: Vibrio crassostreae strain ED395
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2594310..2605314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS519_RS11640 (IS519_11635)	zapB	2594483..2594725 (+)	243	WP_008219652.1	cell division protein ZapB	-
IS519_RS11645 (IS519_11640)	rraA	2594811..2595329 (-)	519	WP_017071322.1	ribonuclease E activity regulator RraA	-
IS519_RS11650 (IS519_11645)	-	2595403..2596320 (-)	918	WP_050632401.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IS519_RS11655 (IS519_11650)	hslU	2596476..2597816 (-)	1341	WP_048605412.1	HslU--HslV peptidase ATPase subunit	-
IS519_RS11660 (IS519_11655)	hslV	2597875..2598423 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
IS519_RS11665 (IS519_11660)	-	2598648..2599187 (-)	540	WP_048605407.1	SPOR domain-containing protein	-
IS519_RS11670 (IS519_11665)	cytR	2599310..2600314 (-)	1005	WP_048605405.1	DNA-binding transcriptional regulator CytR	Regulator
IS519_RS11675 (IS519_11670)	priA	2600555..2602756 (-)	2202	WP_248638920.1	primosomal protein N'	-
IS519_RS11680 (IS519_11675)	rpmE	2603089..2603307 (+)	219	WP_004737142.1	50S ribosomal protein L31	-
IS519_RS11685 (IS519_11680)	-	2603641..2604930 (+)	1290	WP_017061144.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36571.11 Da
• Isoelectric Point: 6.4911

>NTDB_id=499938 IS519_RS11670 WP_048605405.1 2599310..2600314(-) (cytR) [Vibrio crassostreae strain ED395]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQETKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=499938 IS519_RS11670 WP_048605405.1 2599310..2600314(-) (cytR) [Vibrio crassostreae strain ED395]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCAGTTTCGACTCGCAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCATT
TGTTAACTTAGTTTTCACCAAACAAGCCGACGGCATGCTTCTGCTGGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAATTTACCGCCGATGGTAATGGCATGTGAGTTTGCCCCTGAGCTTGAACTGCCTACGGTACACATCGATAAC
CTGACCTCTGCCTTTGAAGCGGTTAACTACCTCGCTCAGTTAGGTCATAAACGTATTGCTCAAATCTCAGGCCCCGTATC
GGCAACGCTGTGTAAGTTCCGCCAACAAGGCTACCAACAAGCACTGCGCCGCGCTGGAGTCTCTATGAATCCAGCCTACA
GCACGGTTGGTGACTTCACCTTTGAAGCGGGCGCTCAAGCGGTTCGTCAATTGCTGGCTCTGCCTGAACAGCCAACCGCT
ATTTTCTGTCACAACGATGCGATGGCGATTGGTGCGATTCAAGAAACGAAGAAGCTGGGCTTGCGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTGGTTCGAGGCAGTACAGCGCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

3D structure

• AlphaFold DB: A0A4U2D2Z2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.387	99.701	0.871