Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IS519_RS03445 Genome accession   NZ_CP064170
Coordinates   769239..770420 (+) Length   393 a.a.
NCBI ID   WP_248640393.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 764239..775420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS03420 (IS519_03410) - 764396..764851 (+) 456 WP_048611807.1 transcriptional repressor -
  IS519_RS03425 (IS519_03415) - 764911..765471 (+) 561 WP_248640386.1 carbonate dehydratase -
  IS519_RS03430 (IS519_03420) - 765461..766465 (+) 1005 WP_248640387.1 GTP-binding protein -
  IS519_RS03435 (IS519_03425) - 766561..767457 (-) 897 WP_248640389.1 EamA family transporter -
  IS519_RS03440 (IS519_03430) - 767561..768943 (+) 1383 WP_248640391.1 PLP-dependent aminotransferase family protein -
  IS519_RS03445 (IS519_03435) cqsA 769239..770420 (+) 1182 WP_248640393.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IS519_RS03450 (IS519_03440) - 770571..772619 (-) 2049 WP_248640395.1 hybrid sensor histidine kinase/response regulator -
  IS519_RS03455 (IS519_03445) - 772873..773688 (-) 816 WP_122082541.1 TauD/TfdA family dioxygenase -
  IS519_RS03460 (IS519_03450) - 773979..774554 (-) 576 WP_248640403.1 RICIN domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43744.90 Da        Isoelectric Point: 6.6626

>NTDB_id=499923 IS519_RS03445 WP_248640393.1 769239..770420(+) (cqsA) [Vibrio crassostreae strain ED395]
MSDKTKTKPLPSFIEERLNFYIQDLITRNQSQKHLVLGKRPKPNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEQSKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVQALGLTNQVDFITVSLAK
TFAYRAGAIFGPKQLSRTLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=499923 IS519_RS03445 WP_248640393.1 769239..770420(+) (cqsA) [Vibrio crassostreae strain ED395]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCGGAACCAAAGCCAAAAGCATTTGGTATTGGGCAAACGACCTAAGCCCAACGCTGTTGTTATGCAGAGTAATGATTACT
TAGCGCTGTCACATAACAAACCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTAGTGATGTCT
GCCATTTTCTTACAAGATGAGCAGTCTAAGCCCGCGTTTGAAACCGAGCTTGCGAGCTATGTTGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCGGCCAATATTGGACTGCTTCAAACCATCTGCCCACCGGGCACTCCTGTGTATATTGATT
TCCTTGCACACATGTCGCTTTGGGAAGGAATCCGCGCTGCCGGCGCAGTTGCCCACCCGTTTATGCATAACAATATGAAT
CACCTACGCAAACAGTTAGAACGCCACGGCTCAGGCGTCATTGTTGTCGACTCGGTTTACAGTACGATTGGAACCATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCGGTCGTCGTTGATGAATCCCATTCACTGGGTACAC
ATGGAGAAAATGGTGCAGGCTTAGTGCAAGCATTGGGGCTCACCAACCAAGTCGACTTCATCACCGTTAGCTTGGCAAAA
ACCTTTGCTTACCGCGCTGGGGCAATCTTTGGTCCTAAACAACTGTCTAGAACCTTGCCGTTTGTGGCGTACCCTGCGAT
TTTTAGCTCGACAGTGTTACCACAAGAAGTGGTTCGTTTAGAGAAAACGTTGGAGGTGATCAAAGGTGCGGAAGACAAAC
GAGAAGCCTTATTCAATCGGGCAAAGTCGCTGACTACGGGGCTAAAGCGAATTGGCTTTAACATCCGCAGTGAGTCTCAA
ATTGTAGCGCTAGAGTGCGGCAATGAAAGAAACACGGAGCGTGTGCGTGACTTCTTAGAAGAACGTGATGTGTTCGGTGC
GGTTTTCTGCCGCCCTGCTACTGGCAAGAACAAAAACATCATCCGTTTTTCAGTGAATGCCGACATGACGCCAAGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAAGCGTACCATCACCCCGAGTTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55