Detailed information NTG0499922

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IS519_RS03355
• Genome accession: NZ_CP064170
• Coordinates: 752795..754219 (+)
• Length: 474 a.a.
• NCBI ID: WP_248640374.1
• Uniprot ID: -
• Organism: Vibrio crassostreae strain ED395
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 747795..759219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS519_RS03340 (IS519_03330)	-	750136..750846 (-)	711	WP_081228623.1	molecular chaperone	-
IS519_RS03345 (IS519_03335)	-	750843..751280 (-)	438	WP_122082941.1	DUF4402 domain-containing protein	-
IS519_RS03350 (IS519_03340)	-	751333..751767 (-)	435	WP_048611824.1	DUF4402 domain-containing protein	-
IS519_RS03355 (IS519_03345)	sbcB	752795..754219 (+)	1425	WP_248640374.1	exodeoxyribonuclease I	Machinery gene
IS519_RS03360 (IS519_03350)	-	754245..754616 (+)	372	WP_004734867.1	CidA/LrgA family protein	-
IS519_RS03365 (IS519_03355)	-	754619..755296 (+)	678	WP_017059134.1	LrgB family protein	-
IS519_RS03370 (IS519_03360)	cdd	755583..756470 (+)	888	WP_017059133.1	cytidine deaminase	-
IS519_RS03375 (IS519_03365)	purT	756638..757813 (+)	1176	WP_017059132.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
IS519_RS03380 (IS519_03370)	-	757944..758597 (-)	654	WP_248640382.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54648.99 Da
• Isoelectric Point: 4.9185

>NTDB_id=499922 IS519_RS03355 WP_248640374.1 752795..754219(+) (sbcB) [Vibrio crassostreae strain ED395]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIGKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADKLRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=499922 IS519_RS03355 WP_248640374.1 752795..754219(+) (sbcB) [Vibrio crassostreae strain ED395]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACTTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCACCTGAAGCTGCATTGATTACCCGTATCACGCCACAGAAAGCGGCTTCACAAGGTCTTCCTGAACCT
GAGTTTATCGGTAAGATCCATGCTGAGTTAGCGAAACCTAACACCACAAGCCTTGGCTATAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCATGGAGCTGGCAGAATGGCAACTCTCGTTGGG
ATTTATTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTACCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTAAATGACCTGGTTGATATCGTAAACATGACACCATTGATGCACGTTTCAGGCATGTTTGGCCGTGACTGCAACTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATAAACTCAGAGAAAGGCTCTATACCAAACGCAGTGAACTGGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAAAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGCGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTCAGTGACGAA
CGAATTAAACCGTTACTGTTCCGTTACCGTGCGCGTAACTTCCCATGGACGCTCGACGAAGCTGAGCAGTTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAGTGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.321	99.789	0.762