Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD52_RS02355 Genome accession   NZ_CP064129
Coordinates   499955..500551 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M911-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 494955..505551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD52_RS02335 - 495147..496904 (-) 1758 WP_016529118.1 Lon protease family protein -
  IOD52_RS02340 matP 497090..497542 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IOD52_RS02345 ompA 497674..498744 (-) 1071 WP_002898408.1 porin OmpA -
  IOD52_RS02350 sulA 499097..499606 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  IOD52_RS02355 sxy/tfoX 499955..500551 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD52_RS02360 yccS 500565..502700 (-) 2136 WP_002898422.1 YccS family putative transporter -
  IOD52_RS02365 - 502718..503164 (-) 447 WP_002898425.1 YccF domain-containing protein -
  IOD52_RS02370 helD 503289..505343 (+) 2055 WP_032416944.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=499874 IOD52_RS02355 WP_004179217.1 499955..500551(+) (sxy/tfoX) [Klebsiella pneumoniae strain M911-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=499874 IOD52_RS02355 WP_004179217.1 499955..500551(+) (sxy/tfoX) [Klebsiella pneumoniae strain M911-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51