Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KKZ15_RS00520 Genome accession   NZ_CP075716
Coordinates   108392..109816 (-) Length   474 a.a.
NCBI ID   WP_088845946.1    Uniprot ID   -
Organism   Escherichia coli strain CPww7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103392..114816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ15_RS00490 (KKZ15_00485) yeeZ 103447..104271 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KKZ15_RS00495 (KKZ15_00490) yeeY 104317..105246 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KKZ15_RS00500 (KKZ15_00495) yoeI 105461..105523 (+) 63 WP_010723108.1 membrane protein YoeI -
  KKZ15_RS00505 (KKZ15_00500) plaP 105513..106871 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KKZ15_RS00510 (KKZ15_00505) tsuA 107050..108108 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  KKZ15_RS00515 (KKZ15_00510) tsuB 108122..108349 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KKZ15_RS00520 (KKZ15_00515) sbcB 108392..109816 (-) 1425 WP_088845946.1 exodeoxyribonuclease I Machinery gene
  KKZ15_RS00525 (KKZ15_00520) - 109998..111176 (+) 1179 WP_025404398.1 site-specific integrase -
  KKZ15_RS00530 (KKZ15_00525) - 111157..111348 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  KKZ15_RS00535 (KKZ15_00530) - 111426..111770 (-) 345 WP_032084204.1 hypothetical protein -
  KKZ15_RS00540 (KKZ15_00535) - 111871..112050 (-) 180 WP_032169734.1 Eag protein -
  KKZ15_RS00545 (KKZ15_00540) - 112112..112585 (+) 474 Protein_108 tail needle knob protein -
  KKZ15_RS00550 (KKZ15_00545) - 112585..113040 (+) 456 WP_001296868.1 DUF2824 family protein -
  KKZ15_RS00555 (KKZ15_00550) - 113043..113735 (+) 693 WP_000964864.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54381.63 Da        Isoelectric Point: 5.4720

>NTDB_id=499803 KKZ15_RS00520 WP_088845946.1 108392..109816(-) (sbcB) [Escherichia coli strain CPww7]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=499803 KKZ15_RS00520 WP_088845946.1 108392..109816(-) (sbcB) [Escherichia coli strain CPww7]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584