Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFX52_RS21715 Genome accession   NZ_CP075697
Coordinates   4468756..4469385 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC2018-607     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4463756..4474385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX52_RS21695 (JFX52_21695) ycbZ 4464157..4465917 (-) 1761 WP_000156526.1 Lon protease family protein -
  JFX52_RS21700 (JFX52_21700) matP 4466103..4466555 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JFX52_RS21705 (JFX52_21705) ompA 4466631..4467671 (-) 1041 WP_000750416.1 porin OmpA -
  JFX52_RS21710 (JFX52_21710) sulA 4468028..4468537 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JFX52_RS21715 (JFX52_21715) sxy/tfoX 4468756..4469385 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JFX52_RS21720 (JFX52_21720) yccS 4469348..4471510 (-) 2163 WP_000875020.1 YccS family putative transporter -
  JFX52_RS21725 (JFX52_21725) yccF 4471520..4471966 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JFX52_RS21730 (JFX52_21730) helD 4472089..4474143 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=499797 JFX52_RS21715 WP_000839153.1 4468756..4469385(+) (sxy/tfoX) [Escherichia coli strain STEC2018-607]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=499797 JFX52_RS21715 WP_000839153.1 4468756..4469385(+) (sxy/tfoX) [Escherichia coli strain STEC2018-607]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1