Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KKZ08_RS35775 Genome accession   NZ_CP075691
Coordinates   8080533..8082872 (-) Length   779 a.a.
NCBI ID   WP_223778390.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8075533..8087872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS35755 - 8076062..8076946 (-) 885 WP_223778386.1 LysR substrate-binding domain-containing protein -
  KKZ08_RS35760 - 8077042..8077749 (+) 708 WP_223778387.1 succinate dehydrogenase -
  KKZ08_RS35765 - 8077753..8079711 (+) 1959 WP_223778388.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  KKZ08_RS35770 - 8079708..8080454 (+) 747 WP_223778389.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  KKZ08_RS35775 uvrA 8080533..8082872 (-) 2340 WP_223778390.1 excinuclease ABC subunit UvrA Machinery gene
  KKZ08_RS35780 - 8083029..8083484 (+) 456 WP_223778391.1 cold shock domain-containing protein -
  KKZ08_RS35785 - 8083512..8084648 (-) 1137 WP_223778392.1 alpha-hydroxy acid oxidase -
  KKZ08_RS35790 hppD 8084629..8085720 (-) 1092 WP_223779329.1 4-hydroxyphenylpyruvate dioxygenase -
  KKZ08_RS35795 - 8085886..8086578 (+) 693 WP_223778393.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
  KKZ08_RS35800 - 8086566..8086970 (+) 405 WP_223778394.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 83429.50 Da        Isoelectric Point: 6.8978

>NTDB_id=499722 KKZ08_RS35775 WP_223778390.1 8080533..8082872(-) (uvrA) [Streptomyces sp. 135]
MHSPHDPFVRVRGAREHNLRGVDVDIPRDVLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPKVGE
ITGLPPAVSLQQRRSSPTSRSSVGTVTTLSNSLRMLFSRAGSYPEGAERLDSDAFSPNTAAGACPACHGLGRVHRTTEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELDAADREWILFTDEQPVVTVHPVREAGRIQRPYQGTY
MSARRYVMKTFADSKSQTLRAKAERFLASAPCAACGGSRLRPEALAVTFAGRTIAELAALPLSELADVLAGAADTSETAR
VLTEDLLARIATVTELGLGYLSPDRATPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLDRLKAA
GNSVFVVEHHLDVVRHADWLVDVGPHAGEHGGRVLHSGPVAALEGVEESATARFLFGREPAPVREVRAPRGWLKVGPVTR
HNLRAVTAKVPLGAFTAVTGVSGSGKSTLVGEITEELPGVGRLVRVDQKPIGRTPRSNLATYTGLFDVVRKVFAATEAAK
ERGYGVGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCAGARYNPATLEVTYHGKNIAEVLDLTVEAAAEFFAD
TPSVVRSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRARRGHTLYLLDEPTTGLHPADVEVLTHRLHELVDAG
NSVVVVEHDMAVVAGADWVIDLGPDGGEGGGRIVAAGPPRDVARAQDSRTAPYLRHALD

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=499722 KKZ08_RS35775 WP_223778390.1 8080533..8082872(-) (uvrA) [Streptomyces sp. 135]
ATGCACAGCCCCCACGATCCGTTCGTACGCGTCCGGGGTGCCCGGGAGCACAACCTCCGGGGCGTCGACGTGGACATCCC
GCGAGACGTGCTCGCGGTGTTCACCGGCGTCTCCGGCTCGGGGAAGTCCTCGCTCGCCTTCGGGACGATCTACGCCGAGG
CGCAGCGGCGCTACTTCGAGTCCGTCGCCCCGTACGCCCGGCGGCTCATCCACCAGGTGGGCGCCCCGAAGGTCGGTGAG
ATCACGGGCCTGCCGCCCGCCGTCTCGCTCCAGCAGCGCCGCTCGTCGCCGACCTCGCGCTCCTCCGTCGGCACGGTGAC
CACCCTGTCCAACTCCCTGCGGATGCTCTTCTCCCGCGCCGGCAGCTACCCCGAGGGCGCCGAGCGGCTCGACTCGGACG
CCTTCTCGCCGAACACCGCGGCCGGCGCGTGCCCTGCGTGCCATGGTCTGGGCCGTGTCCACCGGACCACCGAGGAGCTG
CTGGTCCCCGACCCCTCGCTGTCCATCCGCGAGGGCGCGATCGCCGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTCCG
GGACGTCCTGGACACCCTCGGCTACGACGTGGACCGGCCGTGGCGCGAGCTGGACGCCGCCGACCGCGAGTGGATCCTCT
TCACGGACGAGCAGCCGGTGGTGACCGTGCACCCGGTGCGCGAGGCGGGCCGCATCCAACGCCCGTACCAGGGCACGTAC
ATGAGCGCCCGGCGCTATGTCATGAAGACCTTCGCGGACTCCAAGAGCCAGACGCTGCGGGCCAAGGCGGAACGGTTCCT
GGCGAGCGCGCCCTGCGCGGCGTGCGGCGGGAGCAGGCTGCGTCCGGAGGCGCTGGCGGTCACGTTCGCGGGCCGGACGA
TCGCCGAGCTGGCCGCGCTCCCCCTGTCCGAGCTGGCGGACGTCCTCGCGGGCGCCGCGGACACGTCCGAGACGGCGCGC
GTACTGACCGAGGACCTGTTGGCCCGCATCGCGACCGTCACCGAGCTGGGCCTCGGCTATCTCAGTCCGGACCGTGCCAC
GCCCACCCTGTCGGCGGGAGAGCTCCAGCGCCTGCGGCTCGCGACGCAGCTCCGCTCGGGCCTGTTCGGGGTGGTGTACG
TGCTGGACGAGCCGTCGGCGGGGCTCCATCCGGCGGACACGGAGGCCTTGCTGACGGTTCTCGACCGCCTCAAGGCCGCC
GGCAACTCCGTCTTCGTCGTGGAGCACCATCTCGACGTCGTACGCCACGCGGACTGGCTCGTCGACGTCGGCCCCCACGC
GGGCGAGCACGGCGGCCGGGTGCTGCACAGCGGCCCGGTCGCCGCGCTCGAAGGCGTCGAGGAGTCGGCGACCGCCCGCT
TCCTCTTCGGCCGCGAGCCCGCTCCGGTACGCGAAGTGCGCGCGCCTCGCGGTTGGTTGAAGGTCGGCCCGGTCACCCGG
CACAATCTGCGCGCGGTGACGGCGAAGGTCCCGCTCGGCGCCTTCACGGCGGTCACGGGCGTCTCCGGCTCGGGCAAGTC
CACGCTCGTCGGCGAGATCACCGAGGAACTGCCGGGCGTCGGCCGGCTGGTCCGCGTCGACCAGAAGCCGATCGGCCGCA
CGCCGCGCTCCAACCTCGCCACCTACACGGGCCTCTTCGACGTCGTACGCAAGGTCTTCGCGGCCACGGAGGCGGCGAAG
GAGCGGGGTTACGGCGTCGGCCGGTTCTCGTTCAACGTCGCGGGCGGGCGGTGCGAGACCTGTCAGGGCGAGGGGTTCGT
CAGCGTCGAGCTGCTCTTCCTGCCGAGCACGTACGCGCCCTGCCCGGACTGTGCGGGCGCCCGCTACAACCCGGCGACCC
TCGAGGTGACGTACCACGGGAAGAACATCGCCGAGGTGCTCGACCTGACGGTGGAGGCGGCCGCGGAGTTCTTCGCGGAC
ACGCCGTCCGTCGTCCGCAGCCTGCGCACGCTCCTCGACGTCGGTCTCGGCTATCTGCGGCTCGGGCAGCCGGCCACGGA
GCTGTCGGGCGGGGAGGCCCAGCGGATCAAGCTGGCGAGCGAGTTGCAGCGGGCTCGGCGCGGGCACACGCTCTATCTCC
TCGACGAGCCGACGACGGGGCTGCACCCCGCCGACGTGGAGGTGCTCACGCACCGCCTGCACGAACTGGTCGACGCCGGG
AACTCGGTGGTCGTCGTCGAGCACGACATGGCGGTGGTGGCGGGCGCGGACTGGGTCATCGACCTGGGCCCGGACGGTGG
CGAGGGCGGCGGCCGGATCGTGGCGGCGGGCCCGCCGAGGGACGTGGCGCGGGCGCAGGACAGCCGCACAGCGCCGTACT
TGCGCCACGCGCTCGACTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(483-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.772

91.271

0.381
  uvrA Streptococcus pneumoniae TIGR4

41.772

91.271

0.381
  uvrA Streptococcus pneumoniae D39

41.772

91.271

0.381