Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KKZ08_RS28670 Genome accession   NZ_CP075691
Coordinates   6355011..6355796 (-) Length   261 a.a.
NCBI ID   WP_223777175.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6350011..6360796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS28655 - 6350182..6350964 (+) 783 WP_223777172.1 GNAT family N-acetyltransferase -
  KKZ08_RS28660 - 6351023..6352903 (+) 1881 WP_223777173.1 IucA/IucC family siderophore biosynthesis protein -
  KKZ08_RS28665 - 6352944..6354914 (+) 1971 WP_223777174.1 ATP-dependent DNA helicase -
  KKZ08_RS28670 dinR/lexA 6355011..6355796 (-) 786 WP_223777175.1 transcriptional repressor LexA Regulator
  KKZ08_RS28675 nrdR 6356293..6356838 (+) 546 WP_223777176.1 transcriptional regulator NrdR -
  KKZ08_RS28680 - 6356976..6359876 (+) 2901 WP_223777177.1 vitamin B12-dependent ribonucleotide reductase -
  KKZ08_RS28685 - 6360036..6360758 (-) 723 WP_346657896.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28253.95 Da        Isoelectric Point: 7.4236

>NTDB_id=499714 KKZ08_RS28670 WP_223777175.1 6355011..6355796(-) (dinR/lexA) [Streptomyces sp. 135]
MTTTADSATITAQDRSQSRLEPVHAMNDAATNQEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=499714 KKZ08_RS28670 WP_223777175.1 6355011..6355796(-) (dinR/lexA) [Streptomyces sp. 135]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGAACCAGGAGGGGCCGAAGCCCGCGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCCGACAGCT
CGGGGCTCACCGACCGGCAGCGCAGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCACCGTCGATG
CGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACTTCCTCGGTGGCCCACCAGCTGATGGCTCTGGAGCGCAAGGGTTT
CCTCCGTCGCGACCCCCACCGTCCGCGCGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCAGTCAGCCCACCGACACCA
CCGGCAAGCCCGCCGCGTCGTACGTCCCGCTCGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCTCTCCCCCGGCAGCTCGTGGGCGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCCGCCA
TGCTGGACGGCGAAGCGACGGTCAAGCGTTTCAAGCGGGAGGACGGGCACGTCTGGCTCCTCCCGCACAACTCCGCGTAC
CAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379