Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KKZ08_RS25030 Genome accession   NZ_CP075691
Coordinates   5508664..5509698 (+) Length   344 a.a.
NCBI ID   WP_223776588.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5503664..5514698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS25010 - 5503737..5504762 (-) 1026 WP_223776584.1 ABC transporter permease -
  KKZ08_RS25015 - 5505128..5506750 (+) 1623 WP_223776585.1 ABC transporter substrate-binding protein -
  KKZ08_RS25020 - 5506764..5507687 (+) 924 WP_223776586.1 ABC transporter permease -
  KKZ08_RS25025 - 5507680..5508657 (+) 978 WP_223776587.1 ABC transporter permease -
  KKZ08_RS25030 amiE 5508664..5509698 (+) 1035 WP_223776588.1 ABC transporter ATP-binding protein Regulator
  KKZ08_RS25035 - 5509685..5510725 (+) 1041 WP_223776589.1 dipeptide ABC transporter ATP-binding protein -
  KKZ08_RS25040 - 5510734..5512914 (-) 2181 WP_223776590.1 alpha/beta fold hydrolase -
  KKZ08_RS25045 - 5513062..5513256 (+) 195 WP_127909498.1 hypothetical protein -
  KKZ08_RS25050 mshB 5513307..5514230 (+) 924 WP_223776591.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37436.21 Da        Isoelectric Point: 6.0494

>NTDB_id=499698 KKZ08_RS25030 WP_223776588.1 5508664..5509698(+) (amiE) [Streptomyces sp. 135]
MATASEASTEAPTTLLEVRDLHVEFRTRDGVAQAVNGVDYAVSAGETLAVLGESGSGKSVTAQAVMGILDTPPGRITAGE
ILFQGRDLLKLKEGERREVRGAGMAMIFQDALSSLNPVLSVGDQLAEMYVVHRGMSKKDARARAIELMDRVRIPAARERV
GQYPHQFSGGMRQRIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADTIAVM
YAGRIVERAPVHEIYRAPAHPYTRGLLASIPRLDQKGQDLYAIKGLPPNLMNIPPGCAFHPRCPLAQDVCVTEEPPLARV
TYEGLVAERRSACHFWKETLDATR

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=499698 KKZ08_RS25030 WP_223776588.1 5508664..5509698(+) (amiE) [Streptomyces sp. 135]
ATGGCAACCGCTTCCGAGGCGTCGACCGAAGCGCCCACCACGCTCCTCGAAGTACGCGACCTGCATGTGGAGTTCCGGAC
CAGGGACGGCGTCGCCCAGGCCGTCAACGGCGTCGACTACGCCGTCAGCGCGGGCGAGACGCTGGCCGTGCTCGGCGAGT
CAGGCTCGGGCAAGTCCGTGACCGCCCAGGCCGTCATGGGCATCCTCGACACACCGCCGGGCAGGATCACCGCGGGCGAG
ATCCTCTTCCAGGGCCGCGACCTGCTGAAGCTCAAGGAGGGCGAGCGGCGCGAGGTCCGCGGCGCGGGCATGGCGATGAT
CTTCCAGGACGCCCTGTCGTCCCTGAACCCGGTGCTGAGCGTCGGCGACCAGCTCGCCGAGATGTACGTCGTCCACCGGG
GCATGTCCAAGAAGGACGCCAGGGCCAGGGCCATCGAACTGATGGACCGGGTGCGCATCCCGGCCGCCCGCGAACGCGTC
GGCCAGTACCCGCACCAGTTCAGCGGCGGCATGCGCCAGCGCATCATGATCGCCATGGCGATGGCCCTGGAGCCCTCCCT
CATCATCGCCGACGAGCCGACCACCGCCCTCGACGTCACCGTCCAGGCACAGGTGATGGACCTCCTCGCGGAGCTCCAGC
GCGAGCTGCACATGGGCCTGATCCTCATCACCCACGACCTCGGGGTCGTCGCCGACGTCGCCGACACCATCGCCGTCATG
TACGCGGGCCGCATCGTCGAGAGGGCCCCCGTCCACGAGATCTACCGGGCGCCCGCCCACCCGTACACGCGCGGCCTGCT
CGCCTCCATCCCGCGCCTGGACCAGAAGGGCCAGGACCTCTACGCGATCAAGGGCCTGCCGCCCAACCTCATGAACATCC
CGCCCGGCTGCGCCTTCCACCCCCGCTGCCCCCTGGCCCAGGACGTCTGCGTCACCGAGGAACCGCCGCTGGCCCGGGTG
ACGTACGAGGGCCTCGTCGCGGAACGCAGGAGCGCCTGCCACTTCTGGAAGGAGACGCTCGATGCCACACGGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(246-310)

ABC transporter (ABC_tran)

(36-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.889

91.57

0.448
  amiE Streptococcus thermophilus LMG 18311

47.771

91.279

0.436
  amiE Streptococcus thermophilus LMD-9

47.771

91.279

0.436
  oppD Streptococcus mutans UA159

47.557

89.244

0.424