Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KKZ08_RS24960 Genome accession   NZ_CP075691
Coordinates   5493588..5494649 (+) Length   353 a.a.
NCBI ID   WP_223776575.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5488588..5499649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS24945 - 5489973..5491601 (+) 1629 WP_223776572.1 ABC transporter substrate-binding protein -
  KKZ08_RS24950 - 5491692..5492621 (+) 930 WP_223776573.1 ABC transporter permease -
  KKZ08_RS24955 - 5492614..5493576 (+) 963 WP_223776574.1 ABC transporter permease -
  KKZ08_RS24960 amiE 5493588..5494649 (+) 1062 WP_223776575.1 ABC transporter ATP-binding protein Regulator
  KKZ08_RS24965 - 5494726..5495835 (+) 1110 WP_223779176.1 dipeptide ABC transporter ATP-binding protein -
  KKZ08_RS24970 - 5495982..5496539 (+) 558 WP_223776576.1 SigE family RNA polymerase sigma factor -
  KKZ08_RS24975 - 5496532..5497203 (+) 672 WP_223776577.1 hypothetical protein -
  KKZ08_RS24980 - 5497295..5497873 (+) 579 WP_223776578.1 GNAT family N-acetyltransferase -
  KKZ08_RS24985 - 5497886..5498470 (-) 585 WP_223776579.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38553.67 Da        Isoelectric Point: 7.0154

>NTDB_id=499694 KKZ08_RS24960 WP_223776575.1 5493588..5494649(+) (amiE) [Streptomyces sp. 135]
MTSIDLKTDSVPAPRSGEEKSGRLLDVKDLHVEFHTRDGVVKAVNGVNYSVDAGETLAVLGESGSGKSVTAQAIMGILDM
PPGKIPHGEILFRGQDMLKMSGEERRKIRGRKIAMIFQDALSSLNPVLSVGYQLGEMFRVHEGLGRKEAKAKAIELMDKV
KIPAAKDRVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVA
DVADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLKIPGGCAFNPRCPKAQDICR
TEVPALVPVTERDGGELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=499694 KKZ08_RS24960 WP_223776575.1 5493588..5494649(+) (amiE) [Streptomyces sp. 135]
GTGACCAGCATCGATCTGAAGACAGACTCCGTCCCCGCCCCCCGCTCGGGCGAGGAGAAGAGCGGCAGGCTCCTGGACGT
CAAGGACCTGCACGTCGAGTTCCACACCCGAGACGGTGTGGTCAAGGCCGTCAACGGCGTCAACTACAGCGTGGACGCGG
GCGAGACGCTCGCCGTCCTCGGTGAGTCGGGGTCCGGCAAGTCCGTGACCGCGCAGGCCATCATGGGCATCCTCGACATG
CCGCCCGGCAAGATCCCGCACGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCGGGCGAGGAGCGCAGGAA
GATCCGCGGCCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTCAACCCCGTCCTCTCGGTGGGCTACCAGC
TCGGCGAGATGTTCCGGGTGCACGAGGGGCTCGGCCGCAAGGAGGCCAAGGCCAAGGCCATCGAGCTGATGGACAAGGTC
AAGATCCCGGCCGCCAAGGACCGGGTGAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGC
GATGGCACTCGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCCACCACGGCGCTCGACGTGACGGTCCAGGCCCAGG
TCATGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTGGTCGCC
GACGTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGACGGCACCGGTCCACGAGCTGTACAAGCGCCC
CGCGCACCCGTACACCCGTGGCCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGG
GCCTGCCGCCCAACCTGCTCAAGATCCCCGGTGGTTGCGCGTTCAACCCGCGCTGCCCGAAGGCGCAGGACATCTGCCGC
ACGGAGGTCCCGGCCCTGGTGCCGGTCACCGAGCGGGACGGCGGGGAGCTGCCGGGCCGCGGCAGCGCGTGCCACTTCTG
GAAGGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(255-319)

ABC transporter (ABC_tran)

(45-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.163

85.269

0.436
  amiE Streptococcus thermophilus LMG 18311

50.831

85.269

0.433
  amiE Streptococcus thermophilus LMD-9

50.831

85.269

0.433
  oppD Streptococcus mutans UA159

49.191

87.535

0.431