Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KKZ08_RS14010 Genome accession   NZ_CP075691
Coordinates   3131022..3132077 (-) Length   351 a.a.
NCBI ID   WP_223774766.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126022..3137077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS13985 - 3127136..3127660 (-) 525 WP_223774762.1 universal stress protein -
  KKZ08_RS13990 - 3128198..3128470 (+) 273 WP_223774763.1 hypothetical protein -
  KKZ08_RS13995 - 3128894..3130123 (+) 1230 WP_223774764.1 helix-turn-helix domain-containing protein -
  KKZ08_RS14000 orn 3130134..3130736 (+) 603 WP_223774765.1 oligoribonuclease -
  KKZ08_RS14010 cytR 3131022..3132077 (-) 1056 WP_223774766.1 LacI family DNA-binding transcriptional regulator Regulator
  KKZ08_RS14015 - 3132379..3133692 (+) 1314 WP_223774767.1 extracellular solute-binding protein -
  KKZ08_RS14020 - 3133698..3134702 (+) 1005 WP_223774768.1 sugar ABC transporter permease -
  KKZ08_RS14025 - 3134699..3135571 (+) 873 WP_223774769.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37529.56 Da        Isoelectric Point: 5.3193

>NTDB_id=499665 KKZ08_RS14010 WP_223774766.1 3131022..3132077(-) (cytR) [Streptomyces sp. 135]
MAGHAARGRGGGRPTLEEVAARAGVGRGTVSRVINGSPRVSAATRTAVEAAVAELGYVPNTAARALAANRTDAIALVVPE
PETRFFAEPYFSDVLRGVGAQLSETEMQLLLIFAGNDQRRQRLAQYLAAHRVDGVLLVSVHADDPLPDLLSQLEIPAVIS
GRRCADEPLPSVDSDNFAGACAAVDHLLARGRTAIATITGRLDVYGAQRRLDGYRAALRDAGRPVDERLIAPGDFTEEGG
RRAMRELLAACPEVDAVFAGSDVMAAGARQALREAGRRIPDDVALVGFDDSAIARHMDPPLTSVRQPIEEMGRAMIDLLL
AEIADDRPAAVRRLERRQLVLPTELVERDSS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=499665 KKZ08_RS14010 WP_223774766.1 3131022..3132077(-) (cytR) [Streptomyces sp. 135]
ATGGCAGGTCACGCAGCGCGCGGCCGCGGCGGCGGACGACCGACTCTGGAGGAGGTCGCCGCGCGGGCGGGAGTGGGCCG
GGGGACGGTGTCCCGCGTGATCAACGGCTCGCCCAGGGTCAGCGCGGCCACCCGGACGGCCGTCGAGGCCGCCGTTGCGG
AACTGGGCTACGTACCCAACACCGCGGCCCGCGCCCTGGCCGCCAACCGCACGGACGCGATCGCCCTGGTCGTACCCGAG
CCCGAGACCCGCTTCTTCGCCGAGCCGTACTTCTCCGACGTGCTGCGCGGGGTGGGCGCCCAGCTCAGCGAGACCGAGAT
GCAGCTGCTGCTGATCTTCGCGGGGAACGACCAGCGGCGGCAGCGCCTGGCCCAGTACCTCGCGGCCCACCGCGTCGACG
GCGTACTGCTGGTCTCCGTGCACGCCGACGACCCGCTGCCGGACCTGCTGAGCCAGCTGGAGATCCCCGCGGTGATCAGC
GGCCGCCGCTGTGCCGATGAGCCGCTGCCCTCGGTCGACTCCGACAACTTCGCCGGGGCGTGCGCGGCGGTGGACCACCT
GCTGGCGCGCGGGCGCACGGCCATAGCCACCATCACCGGCCGCCTCGACGTGTACGGCGCCCAGCGCCGCCTCGACGGCT
ACCGCGCCGCGCTGCGGGACGCGGGCCGCCCGGTCGACGAGCGGCTGATCGCGCCGGGCGACTTCACGGAGGAGGGCGGC
CGCCGCGCGATGCGGGAGCTGCTCGCGGCCTGCCCCGAGGTGGACGCGGTCTTCGCGGGCTCCGACGTGATGGCGGCGGG
CGCCCGGCAGGCGCTGCGGGAGGCGGGCCGCCGGATACCCGACGACGTGGCGCTGGTCGGCTTCGACGACTCGGCGATCG
CCCGCCACATGGATCCGCCGCTCACCAGCGTGCGGCAGCCGATCGAGGAGATGGGGCGGGCCATGATCGACCTGCTCCTC
GCGGAGATCGCCGACGACCGCCCGGCGGCCGTCCGCCGCCTGGAGCGACGCCAGCTTGTGCTCCCGACGGAACTGGTGGA
GCGGGACTCTTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-60)

Periplasmic binding protein-like domain (Peripla_BP_3)

(184-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.026

97.721

0.362