Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KKZ08_RS12455 Genome accession   NZ_CP075691
Coordinates   2761039..2762772 (+) Length   577 a.a.
NCBI ID   WP_223774507.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2756039..2767772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS12420 - 2756591..2756992 (+) 402 WP_223774504.1 DUF6527 family protein -
  KKZ08_RS12425 - 2757099..2757899 (-) 801 WP_223774505.1 site-specific integrase -
  KKZ08_RS12445 - 2759056..2759358 (+) 303 WP_223779025.1 YtxH domain-containing protein -
  KKZ08_RS12450 - 2759441..2760868 (+) 1428 WP_223774506.1 FGGY family carbohydrate kinase -
  KKZ08_RS12455 rcrP 2761039..2762772 (+) 1734 WP_223774507.1 ABC transporter ATP-binding protein Regulator
  KKZ08_RS12460 rcrQ 2762796..2764694 (+) 1899 WP_223779026.1 ABC transporter ATP-binding protein Regulator
  KKZ08_RS12465 - 2764720..2765910 (-) 1191 WP_223774508.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62496.67 Da        Isoelectric Point: 5.5941

>NTDB_id=499659 KKZ08_RS12455 WP_223774507.1 2761039..2762772(+) (rcrP) [Streptomyces sp. 135]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCAALYLPTLNADIIDNGVVEGDTGYILTFGGVMIAVTIVQMVCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVTAPIMCVGGIVMALGQDIPLSGV
LVAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDAYEKERFRGANADLTDVSLGSGRLLAL
MFPIVMTVVNVSSVAVVWFGARRIDGGDMKIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PAEPVRELRSHGHLEIRGAGFRYPGAEEPVLRAIDLVARPGETTAVIGSTGSGKSTLLGLVPRLIDATEGQVLVGGVDVA
SVEPALLARTVSLVPQKPYLFAGTVATNLRYGNPDVTDEELWHALEVAQAKEFVAGLAEGLDAPISQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGSGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=499659 KKZ08_RS12455 WP_223774507.1 2761039..2762772(+) (rcrP) [Streptomyces sp. 135]
GTGCTCATACGACTCCTGCGGACGTACCTGCGCCCGTACAAGAAACCGATCGCCCTGCTGGTGCTGTTGCAGTTCCTCCA
GACCTGCGCCGCGCTCTATCTGCCCACACTGAACGCCGACATCATCGACAACGGCGTCGTCGAGGGGGACACGGGTTACA
TCCTCACCTTCGGCGGCGTCATGATCGCCGTCACCATCGTGCAGATGGTCTGCAACATCGGCGCCGTCTTCTACGGCGCG
CGCACCGCCTCCGCCCTCGGGCGCGACGTCCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCGCGCGAGATGGG
CCAGTTCGGCGCCCCCTCACTGATCACGCGGACCACCAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGTCGTTCA
CGCTGATGGTCACCGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACATCCCCCTCTCCGGGGTG
CTGGTCGCCGTCGTACCCGTCCTCGGGATCAGCGTCAGCCTCATCGTGCGGCGCCTGCGTCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTCAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
CGTACGAGAAGGAGCGCTTCCGCGGGGCCAACGCCGACCTGACCGACGTCTCTCTCGGCAGCGGCAGGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTGAACGTCTCGTCGGTCGCCGTCGTCTGGTTCGGCGCGCGGCGCATCGACGGCGG
CGACATGAAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCCCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTGGACACCGAGTCCAGCGTGGTGCCC
CCGGCCGAACCGGTGCGCGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCCGTCCTGAGGGCCATCGACCTGGTCGCCCGCCCCGGTGAGACGACCGCCGTGATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCCTCGTGCCGCGGCTGATCGACGCGACCGAGGGGCAGGTCCTGGTCGGCGGCGTGGACGTGGCC
AGCGTCGAGCCCGCGCTGCTCGCGCGGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGTGACGGACGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TGGCGGGCCTGGCGGAGGGGCTCGACGCGCCGATCTCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAACGCCTG
TCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGGCGCGCTGTCCCGGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCGCAGCGCGTCTCGACCATCA
GGGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGGGTCGTGGGCAGCGGCCGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.929

97.054

0.378