Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KKZ08_RS00260 Genome accession   NZ_CP075691
Coordinates   48744..48971 (+) Length   75 a.a.
NCBI ID   WP_223772475.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 43744..53971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS00230 - 44247..44702 (+) 456 WP_223772469.1 hypothetical protein -
  KKZ08_RS00235 - 44680..45330 (+) 651 WP_223772470.1 hypothetical protein -
  KKZ08_RS00240 - 45728..46783 (-) 1056 WP_223772471.1 hypothetical protein -
  KKZ08_RS00245 - 46794..47270 (-) 477 WP_223772472.1 hypothetical protein -
  KKZ08_RS00250 - 47717..47914 (-) 198 WP_223772473.1 hypothetical protein -
  KKZ08_RS00255 - 48547..48747 (+) 201 WP_223772474.1 hypothetical protein -
  KKZ08_RS00260 dinR/lexA 48744..48971 (+) 228 WP_223772475.1 MarR family transcriptional regulator Regulator
  KKZ08_RS00265 - 48968..49300 (+) 333 WP_223772476.1 DUF6233 domain-containing protein -
  KKZ08_RS00270 - 49426..49824 (+) 399 Protein_53 Ku protein -
  KKZ08_RS00275 - 49823..50180 (-) 358 Protein_54 IS701 family transposase -
  KKZ08_RS00280 - 50434..50584 (-) 151 Protein_55 IS5/IS1182 family transposase -
  KKZ08_RS00285 - 50627..51076 (-) 450 WP_211827755.1 cupin domain-containing protein -
  KKZ08_RS00290 ilvB 51155..52918 (-) 1764 WP_223772477.1 biosynthetic-type acetolactate synthase large subunit -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8483.60 Da        Isoelectric Point: 11.4593

>NTDB_id=499636 KKZ08_RS00260 WP_223772475.1 48744..48971(+) (dinR/lexA) [Streptomyces sp. 135]
MTRRSWDITDRQRSVLACIRDRVLETGEAPTVREIGAAIGLSSPSSVHYQLRRLEQAGALVRADSGSWRNYRLAR

Nucleotide


Download         Length: 228 bp        

>NTDB_id=499636 KKZ08_RS00260 WP_223772475.1 48744..48971(+) (dinR/lexA) [Streptomyces sp. 135]
ATGACCCGCCGCTCCTGGGACATCACCGACCGCCAGCGCTCGGTCCTGGCCTGCATCCGCGACCGCGTCCTGGAGACCGG
CGAGGCCCCCACCGTGCGCGAGATCGGCGCCGCCATCGGCCTGTCCAGCCCCTCCTCTGTCCACTACCAGCTGCGCCGCC
TGGAGCAGGCCGGCGCCCTCGTGCGCGCCGACAGCGGTAGCTGGAGGAACTACCGGCTCGCGCGATGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(7-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.161

82.667

0.373