Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ISU85_RS19830 Genome accession   NZ_CP064108
Coordinates   4146820..4147443 (-) Length   207 a.a.
NCBI ID   WP_032726136.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain IR5392     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4141820..4152443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISU85_RS19815 (ISU85_19815) helD 4142056..4144110 (-) 2055 WP_016808043.1 DNA helicase IV -
  ISU85_RS19820 (ISU85_19820) - 4144233..4144679 (+) 447 WP_004100782.1 YccF domain-containing protein -
  ISU85_RS19825 (ISU85_19825) yccS 4144697..4146832 (+) 2136 WP_023320658.1 YccS family putative transporter -
  ISU85_RS19830 (ISU85_19830) sxy/tfoX 4146820..4147443 (-) 624 WP_032726136.1 TfoX/Sxy family DNA transformation protein Regulator
  ISU85_RS19835 (ISU85_19835) sulA 4147905..4148414 (+) 510 WP_032726007.1 SOS-induced cell division inhibitor SulA -
  ISU85_RS19840 (ISU85_19840) ompA 4148768..4149838 (+) 1071 WP_004100770.1 porin OmpA -
  ISU85_RS19845 (ISU85_19845) matP 4149949..4150401 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  ISU85_RS19850 (ISU85_19850) - 4150587..4152344 (+) 1758 WP_206998669.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23674.68 Da        Isoelectric Point: 10.2095

>NTDB_id=499623 ISU85_RS19830 WP_032726136.1 4146820..4147443(-) (sxy/tfoX) [Klebsiella oxytoca strain IR5392]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEGYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=499623 ISU85_RS19830 WP_032726136.1 4146820..4147443(-) (sxy/tfoX) [Klebsiella oxytoca strain IR5392]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGGCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493