Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRA68_RS22195 Genome accession   NZ_CP064097
Coordinates   4322324..4322746 (+) Length   140 a.a.
NCBI ID   WP_048019608.1    Uniprot ID   -
Organism   Priestia aryabhattai strain B2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4317324..4327746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRA68_RS22165 - 4317354..4318188 (-) 835 Protein_4299 AraC family transcriptional regulator -
  IRA68_RS22170 - 4318391..4318534 (+) 144 WP_243494872.1 hypothetical protein -
  IRA68_RS22175 - 4318712..4319533 (+) 822 WP_028414492.1 histidine kinase -
  IRA68_RS22180 - 4319534..4320175 (+) 642 WP_033580507.1 response regulator transcription factor -
  IRA68_RS22185 - 4320310..4321689 (+) 1380 WP_243494873.1 PepSY domain-containing protein -
  IRA68_RS22190 - 4321719..4322183 (+) 465 WP_221832550.1 FixH family protein -
  IRA68_RS22195 nucA/comI 4322324..4322746 (+) 423 WP_048019608.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRA68_RS22200 - 4322901..4323254 (+) 354 WP_223272376.1 DUF1516 family protein -
  IRA68_RS22205 - 4323294..4323887 (-) 594 WP_028414498.1 hypothetical protein -
  IRA68_RS22210 - 4324040..4324696 (-) 657 WP_048019653.1 TetR/AcrR family transcriptional regulator -
  IRA68_RS22215 - 4324719..4325996 (-) 1278 WP_243494874.1 glycosyltransferase -
  IRA68_RS22220 - 4326296..4326841 (+) 546 WP_048019606.1 GNAT family N-acetyltransferase -
  IRA68_RS22225 - 4326972..4327457 (-) 486 WP_033580500.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15256.08 Da        Isoelectric Point: 4.4082

>NTDB_id=499575 IRA68_RS22195 WP_048019608.1 4322324..4322746(+) (nucA/comI) [Priestia aryabhattai strain B2]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRSESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=499575 IRA68_RS22195 WP_048019608.1 4322324..4322746(+) (nucA/comI) [Priestia aryabhattai strain B2]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTGATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATCCCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCAGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGATCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGCGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507