Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IRJ28_RS19100 Genome accession   NZ_CP064096
Coordinates   3634713..3635825 (-) Length   370 a.a.
NCBI ID   WP_003243515.1    Uniprot ID   A0AAE2SM46
Organism   Bacillus subtilis strain N1142-3at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3629713..3640825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS19085 gyrA 3629803..3632268 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  IRJ28_RS19090 gyrB 3632479..3634395 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IRJ28_RS19095 remB 3634450..3634695 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  IRJ28_RS19100 recF 3634713..3635825 (-) 1113 WP_003243515.1 DNA replication/repair protein RecF Machinery gene
  IRJ28_RS19105 rlbA 3635841..3636056 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  IRJ28_RS19110 dnaN 3636186..3637322 (-) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  IRJ28_RS19115 dnaA 3637511..3638851 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  IRJ28_RS19120 rpmH 3639478..3639612 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  IRJ28_RS19125 rnpA 3639764..3640114 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42304.34 Da        Isoelectric Point: 7.3660

>NTDB_id=499510 IRJ28_RS19100 WP_003243515.1 3634713..3635825(-) (recF) [Bacillus subtilis strain N1142-3at]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=499510 IRJ28_RS19100 WP_003243515.1 3634713..3635825(-) (recF) [Bacillus subtilis strain N1142-3at]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

100

100

1