Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ28_RS18875 Genome accession   NZ_CP064096
Coordinates   3594137..3594427 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain N1142-3at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589137..3599427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS18860 yabE 3589333..3590646 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  IRJ28_RS18865 dayD 3590802..3591569 (-) 768 WP_003226756.1 TatD family hydrolase -
  IRJ28_RS18870 metG 3591648..3593642 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  IRJ28_RS18875 abrB 3594137..3594427 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ28_RS18880 rsmI 3594476..3595354 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ28_RS18885 yazA 3595329..3595628 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IRJ28_RS18890 trmNF 3595615..3596358 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ28_RS18895 yabA 3596417..3596776 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  IRJ28_RS18900 ricT 3596791..3597618 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  IRJ28_RS18905 holB 3597621..3598610 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  IRJ28_RS18910 yaaR 3598622..3599062 (-) 441 WP_009966249.1 YaaR family protein -
  IRJ28_RS18915 darA 3599075..3599404 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=499508 IRJ28_RS18875 WP_003226760.1 3594137..3594427(+) (abrB) [Bacillus subtilis strain N1142-3at]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499508 IRJ28_RS18875 WP_003226760.1 3594137..3594427(+) (abrB) [Bacillus subtilis strain N1142-3at]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1