Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRJ28_RS13330 Genome accession   NZ_CP064096
Coordinates   2521650..2522228 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N1142-3at     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516650..2527228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS13295 lepB 2516656..2517162 (-) 507 WP_003233128.1 signal peptidase I -
  IRJ28_RS13300 yhjE 2517164..2517787 (-) 624 WP_010886465.1 VTT domain-containing protein -
  IRJ28_RS13305 - 2517939..2518301 (+) 363 WP_003233132.1 hypothetical protein -
  IRJ28_RS13310 yhjC 2518509..2518709 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IRJ28_RS13315 yhjB 2518706..2520175 (+) 1470 WP_003233134.1 sodium:solute symporter -
  IRJ28_RS13320 yhjA 2520218..2520487 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  IRJ28_RS13325 yhxD 2520704..2521603 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  IRJ28_RS13330 comK 2521650..2522228 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  IRJ28_RS13335 yhzC 2522521..2522754 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  IRJ28_RS13340 yhxC 2522782..2523639 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  IRJ28_RS13345 yhfW 2523751..2525280 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  IRJ28_RS13350 hemAT 2525419..2526717 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=499487 IRJ28_RS13330 WP_003245329.1 2521650..2522228(-) (comK) [Bacillus subtilis strain N1142-3at]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=499487 IRJ28_RS13330 WP_003245329.1 2521650..2522228(-) (comK) [Bacillus subtilis strain N1142-3at]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1