Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFX55_RS07390 Genome accession   NZ_CP075663
Coordinates   1415232..1415861 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC2017-197     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1410232..1420861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX55_RS07375 (JFX55_007375) helD 1410474..1412528 (-) 2055 WP_000420533.1 DNA helicase IV -
  JFX55_RS07380 (JFX55_007380) yccF 1412651..1413097 (+) 447 WP_001261231.1 YccF domain-containing protein -
  JFX55_RS07385 (JFX55_007385) yccS 1413107..1415269 (+) 2163 WP_000875044.1 YccS family putative transporter -
  JFX55_RS07390 (JFX55_007390) sxy/tfoX 1415232..1415861 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JFX55_RS07395 (JFX55_007395) sulA 1416080..1416589 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JFX55_RS07400 (JFX55_007400) ompA 1416946..1417986 (+) 1041 WP_000750416.1 porin OmpA -
  JFX55_RS07405 (JFX55_007405) matP 1418062..1418514 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JFX55_RS07410 (JFX55_007410) ycbZ 1418700..1420460 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=499486 JFX55_RS07390 WP_000839153.1 1415232..1415861(-) (sxy/tfoX) [Escherichia coli strain STEC2017-197]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=499486 JFX55_RS07390 WP_000839153.1 1415232..1415861(-) (sxy/tfoX) [Escherichia coli strain STEC2017-197]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1