Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IRJ28_RS11380 Genome accession   NZ_CP064096
Coordinates   2164309..2164773 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain N1142-3at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2159309..2169773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS11360 fadH 2160497..2161261 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  IRJ28_RS11365 ppeE 2161404..2162264 (+) 861 WP_003232400.1 metallophosphoesterase -
  IRJ28_RS11370 ltdD 2162321..2162815 (+) 495 WP_010886500.1 L,D-transpeptidase family protein -
  IRJ28_RS11375 ykuC 2162891..2164183 (+) 1293 WP_003245267.1 MFS transporter -
  IRJ28_RS11380 kre 2164309..2164773 (+) 465 WP_003232406.1 YkyB family protein Regulator
  IRJ28_RS11385 cheV 2164817..2165728 (-) 912 WP_009967126.1 chemotaxis protein CheV -
  IRJ28_RS11390 - 2165932..2166093 (+) 162 WP_003245246.1 hypothetical protein -
  IRJ28_RS11395 dapX 2166295..2167476 (+) 1182 WP_003232415.1 aminotransferase A -
  IRJ28_RS11400 kinA 2167487..2169307 (-) 1821 WP_003245779.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=499475 IRJ28_RS11380 WP_003232406.1 2164309..2164773(+) (kre) [Bacillus subtilis strain N1142-3at]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=499475 IRJ28_RS11380 WP_003232406.1 2164309..2164773(+) (kre) [Bacillus subtilis strain N1142-3at]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1