Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ28_RS11265 Genome accession   NZ_CP064096
Coordinates   2144971..2145546 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1142-3at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139971..2150546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS11240 mobB 2140367..2140888 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  IRJ28_RS11245 glp 2140849..2142141 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  IRJ28_RS11250 moeB 2142159..2143178 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ28_RS11255 mobA 2143229..2143828 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  IRJ28_RS11260 cse15 2143965..2144930 (+) 966 WP_003245018.1 spore protein Cse15 -
  IRJ28_RS11265 rok 2144971..2145546 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IRJ28_RS11270 ykuV 2146012..2146458 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  IRJ28_RS11275 ahpA 2146530..2147072 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  IRJ28_RS11280 mscT 2147309..2148112 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IRJ28_RS11285 ykuS 2148149..2148394 (-) 246 WP_003232382.1 YkuS family protein -
  IRJ28_RS11290 dapI 2148456..2149580 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  IRJ28_RS11295 dapD 2149650..2150360 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=499474 IRJ28_RS11265 WP_003232378.1 2144971..2145546(-) (rok) [Bacillus subtilis strain N1142-3at]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=499474 IRJ28_RS11265 WP_003232378.1 2144971..2145546(-) (rok) [Bacillus subtilis strain N1142-3at]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1