Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ28_RS11145 Genome accession   NZ_CP064096
Coordinates   2121190..2121468 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N1142-3at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2116190..2126468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS11125 ade 2116249..2117982 (-) 1734 WP_003245362.1 adenine deaminase -
  IRJ28_RS11130 ktrC 2118137..2118802 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IRJ28_RS11135 ykqA 2118865..2119698 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  IRJ28_RS11140 kinC 2119714..2121000 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  IRJ28_RS11145 abrB 2121190..2121468 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IRJ28_RS11150 mreBH 2121752..2122759 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IRJ28_RS11155 ykpC 2122860..2122994 (+) 135 WP_003238865.1 protein YkpC -
  IRJ28_RS11160 ampS 2123104..2124336 (+) 1233 WP_003232341.1 aminopeptidase -
  IRJ28_RS11165 - 2124370..2125281 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=499473 IRJ28_RS11145 WP_003244728.1 2121190..2121468(-) (abrB) [Bacillus subtilis strain N1142-3at]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=499473 IRJ28_RS11145 WP_003244728.1 2121190..2121468(-) (abrB) [Bacillus subtilis strain N1142-3at]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576