Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRJ28_RS06955 Genome accession   NZ_CP064096
Coordinates   1297908..1298528 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1142-3at     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292908..1303528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS06935 dnaD 1293199..1293897 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  IRJ28_RS06940 nth 1293916..1294575 (+) 660 WP_009967580.1 endonuclease III -
  IRJ28_RS06945 ypoC 1294572..1295066 (+) 495 WP_009967579.1 YpoC family protein -
  IRJ28_RS06950 ponA 1295142..1297886 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  IRJ28_RS06955 recU 1297908..1298528 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IRJ28_RS06960 yppC 1298569..1299531 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  IRJ28_RS06965 sspM 1299556..1299660 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IRJ28_RS06970 yppD 1299859..1300104 (+) 246 WP_004398488.1 YppD family protein -
  IRJ28_RS06975 yppE 1300150..1300521 (+) 372 WP_003246080.1 YppE family protein -
  IRJ28_RS06980 yppF 1300560..1300748 (-) 189 WP_003230690.1 YppF family protein -
  IRJ28_RS06985 yppG 1300936..1301313 (+) 378 WP_004398696.1 YppG family protein -
  IRJ28_RS06990 ypqA 1301334..1301753 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  IRJ28_RS06995 ypqE 1301891..1302397 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=499468 IRJ28_RS06955 WP_004399067.1 1297908..1298528(-) (recU) [Bacillus subtilis strain N1142-3at]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=499468 IRJ28_RS06955 WP_004399067.1 1297908..1298528(-) (recU) [Bacillus subtilis strain N1142-3at]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1