Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   JFX43_RS18635 Genome accession   NZ_CP075652
Coordinates   3843972..3844964 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain STEC17-183     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838972..3849964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX43_RS18605 (JFX43_018605) ispD 3839033..3839743 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JFX43_RS18610 (JFX43_018610) ispF 3839743..3840222 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JFX43_RS18615 (JFX43_018615) truD 3840219..3841268 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  JFX43_RS18620 (JFX43_018620) surE 3841249..3842010 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  JFX43_RS18625 (JFX43_018625) pcm 3842004..3842630 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  JFX43_RS18630 (JFX43_018630) nlpD 3842815..3843909 (+) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  JFX43_RS18635 (JFX43_018635) rpoS 3843972..3844964 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  JFX43_RS18640 (JFX43_018640) - 3845085..3845492 (-) 408 WP_001208070.1 MarR family transcriptional regulator -
  JFX43_RS18645 (JFX43_018645) - 3845639..3846232 (+) 594 WP_198800384.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  JFX43_RS18650 (JFX43_018650) - 3846232..3847659 (+) 1428 WP_000863195.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  JFX43_RS18655 (JFX43_018655) - 3847670..3847906 (+) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  JFX43_RS18660 (JFX43_018660) ygbN 3847945..3849309 (-) 1365 WP_000104439.1 GntP family transporter -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=499453 JFX43_RS18635 WP_000081550.1 3843972..3844964(+) (rpoS) [Escherichia coli strain STEC17-183]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=499453 JFX43_RS18635 WP_000081550.1 3843972..3844964(+) (rpoS) [Escherichia coli strain STEC17-183]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715