Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRJ27_RS19905 Genome accession   NZ_CP064095
Coordinates   3833544..3834164 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1303-2Ay     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3828544..3839164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS19885 dnaD 3828835..3829533 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  IRJ27_RS19890 nth 3829552..3830211 (+) 660 WP_009967580.1 endonuclease III -
  IRJ27_RS19895 ypoC 3830208..3830702 (+) 495 WP_009967579.1 YpoC family protein -
  IRJ27_RS19900 ponA 3830778..3833522 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  IRJ27_RS19905 recU 3833544..3834164 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IRJ27_RS19910 yppC 3834205..3835167 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  IRJ27_RS19915 sspM 3835192..3835296 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IRJ27_RS19920 yppD 3835495..3835740 (+) 246 WP_004398488.1 YppD family protein -
  IRJ27_RS19925 yppE 3835786..3836157 (+) 372 WP_003246080.1 YppE family protein -
  IRJ27_RS19930 yppF 3836196..3836384 (-) 189 WP_003230690.1 YppF family protein -
  IRJ27_RS19935 yppG 3836572..3836949 (+) 378 WP_004398696.1 YppG family protein -
  IRJ27_RS19940 ypqA 3836970..3837389 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  IRJ27_RS19945 ypqE 3837527..3838033 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=499437 IRJ27_RS19905 WP_004399067.1 3833544..3834164(-) (recU) [Bacillus subtilis strain N1303-2Ay]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=499437 IRJ27_RS19905 WP_004399067.1 3833544..3834164(-) (recU) [Bacillus subtilis strain N1303-2Ay]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1