Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ27_RS18390 Genome accession   NZ_CP064095
Coordinates   3565259..3566026 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain N1303-2Ay     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3560259..3571026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS18360 pgpH 3560555..3562690 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  IRJ27_RS18365 ybeY 3562691..3563164 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  IRJ27_RS18370 unpK 3563145..3563516 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  IRJ27_RS18375 cdd 3563635..3564045 (+) 411 WP_003230049.1 cytidine deaminase -
  IRJ27_RS18380 era 3564026..3564931 (+) 906 WP_003230051.1 GTPase Era -
  IRJ27_RS18385 yqzL 3565079..3565222 (+) 144 WP_003230053.1 YqzL family protein -
  IRJ27_RS18390 recO 3565259..3566026 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  IRJ27_RS18395 glyQ 3566323..3567210 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IRJ27_RS18400 glyS 3567203..3569242 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  IRJ27_RS18405 ccpN 3569375..3570013 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  IRJ27_RS18410 ppsR 3570039..3570851 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=499425 IRJ27_RS18390 WP_003230055.1 3565259..3566026(+) (recO) [Bacillus subtilis strain N1303-2Ay]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=499425 IRJ27_RS18390 WP_003230055.1 3565259..3566026(+) (recO) [Bacillus subtilis strain N1303-2Ay]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1