Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IRJ27_RS09930 Genome accession   NZ_CP064095
Coordinates   1954794..1955906 (-) Length   370 a.a.
NCBI ID   WP_003243515.1    Uniprot ID   A0AAE2SM46
Organism   Bacillus subtilis strain N1303-2Ay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949794..1960906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS09915 gyrA 1949884..1952349 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  IRJ27_RS09920 gyrB 1952560..1954476 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IRJ27_RS09925 remB 1954531..1954776 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  IRJ27_RS09930 recF 1954794..1955906 (-) 1113 WP_003243515.1 DNA replication/repair protein RecF Machinery gene
  IRJ27_RS09935 rlbA 1955922..1956137 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  IRJ27_RS09940 dnaN 1956267..1957403 (-) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  IRJ27_RS09945 dnaA 1957592..1958932 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  IRJ27_RS09950 rpmH 1959559..1959693 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  IRJ27_RS09955 rnpA 1959845..1960195 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42304.34 Da        Isoelectric Point: 7.3660

>NTDB_id=499394 IRJ27_RS09930 WP_003243515.1 1954794..1955906(-) (recF) [Bacillus subtilis strain N1303-2Ay]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=499394 IRJ27_RS09930 WP_003243515.1 1954794..1955906(-) (recF) [Bacillus subtilis strain N1303-2Ay]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

100

100

1