Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ27_RS09705 Genome accession   NZ_CP064095
Coordinates   1914224..1914514 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain N1303-2Ay     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909224..1919514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS09690 yabE 1909420..1910733 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  IRJ27_RS09695 dayD 1910889..1911656 (-) 768 WP_003226756.1 TatD family hydrolase -
  IRJ27_RS09700 metG 1911735..1913729 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  IRJ27_RS09705 abrB 1914224..1914514 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ27_RS09710 rsmI 1914563..1915441 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ27_RS09715 yazA 1915416..1915715 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IRJ27_RS09720 trmNF 1915702..1916445 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ27_RS09725 yabA 1916504..1916863 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  IRJ27_RS09730 ricT 1916878..1917705 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  IRJ27_RS09735 holB 1917708..1918697 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  IRJ27_RS09740 yaaR 1918709..1919149 (-) 441 WP_009966249.1 YaaR family protein -
  IRJ27_RS09745 darA 1919162..1919491 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=499392 IRJ27_RS09705 WP_003226760.1 1914224..1914514(+) (abrB) [Bacillus subtilis strain N1303-2Ay]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499392 IRJ27_RS09705 WP_003226760.1 1914224..1914514(+) (abrB) [Bacillus subtilis strain N1303-2Ay]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1